Strain Fitness in Serratia liquefaciens MT49 around IAI46_03915

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03910 and IAI46_03915 are separated by 169 nucleotidesIAI46_03915 and IAI46_03920 are separated by 216 nucleotidesIAI46_03920 and IAI46_03925 are separated by 18 nucleotides IAI46_03910: IAI46_03910 - inner membrane protein YpjD, at 847,566 to 848,357 _03910 IAI46_03915: IAI46_03915 - signal recognition particle protein, at 848,527 to 849,888 _03915 IAI46_03920: IAI46_03920 - 30S ribosomal protein S16, at 850,105 to 850,353 _03920 IAI46_03925: IAI46_03925 - ribosome maturation factor RimM, at 850,372 to 850,920 _03925 Position (kb) 848 849 850Strain fitness (log2 ratio) -2 -1 0 1 2at 847.538 kb on + strandat 847.538 kb on + strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.542 kb on + strandat 847.543 kb on - strandat 847.543 kb on - strandat 847.543 kb on - strandat 847.567 kb on + strandat 847.568 kb on - strandat 847.607 kb on - strandat 847.678 kb on + strand, within IAI46_03910at 847.700 kb on + strand, within IAI46_03910at 847.701 kb on - strand, within IAI46_03910at 847.701 kb on - strand, within IAI46_03910at 847.702 kb on + strand, within IAI46_03910at 847.702 kb on + strand, within IAI46_03910at 847.703 kb on - strand, within IAI46_03910at 847.722 kb on - strand, within IAI46_03910at 847.722 kb on - strand, within IAI46_03910at 847.722 kb on - strand, within IAI46_03910at 847.769 kb on + strand, within IAI46_03910at 847.770 kb on - strand, within IAI46_03910at 847.771 kb on + strand, within IAI46_03910at 847.771 kb on + strand, within IAI46_03910at 847.771 kb on + strand, within IAI46_03910at 847.772 kb on - strand, within IAI46_03910at 847.772 kb on - strand, within IAI46_03910at 847.815 kb on + strand, within IAI46_03910at 847.930 kb on + strand, within IAI46_03910at 847.931 kb on - strand, within IAI46_03910at 847.931 kb on - strand, within IAI46_03910at 847.953 kb on - strand, within IAI46_03910at 847.957 kb on + strand, within IAI46_03910at 847.957 kb on + strand, within IAI46_03910at 847.980 kb on - strand, within IAI46_03910at 848.015 kb on + strand, within IAI46_03910at 848.033 kb on + strand, within IAI46_03910at 848.033 kb on + strand, within IAI46_03910at 848.071 kb on + strand, within IAI46_03910at 848.157 kb on + strand, within IAI46_03910at 848.157 kb on + strand, within IAI46_03910at 848.157 kb on + strand, within IAI46_03910at 848.158 kb on - strand, within IAI46_03910at 848.158 kb on - strand, within IAI46_03910at 848.158 kb on - strand, within IAI46_03910at 848.201 kb on + strand, within IAI46_03910at 848.269 kb on + strand, within IAI46_03910at 848.323 kb on + strandat 848.357 kb on + strandat 848.357 kb on + strandat 848.401 kb on + strandat 848.402 kb on - strandat 848.402 kb on - strandat 848.402 kb on - strandat 848.468 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strandat 849.920 kb on - strandat 849.990 kb on - strandat 849.996 kb on + strandat 849.997 kb on - strandat 849.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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847,538 + +0.4
847,538 + -2.0
847,539 - +0.5
847,539 - +0.5
847,539 - +0.1
847,539 - -0.5
847,539 - +0.8
847,542 + -1.2
847,543 - -0.5
847,543 - -0.6
847,543 - +0.7
847,567 + -0.4
847,568 - +0.4
847,607 - +0.3
847,678 + IAI46_03910 0.14 +1.6
847,700 + IAI46_03910 0.17 -0.4
847,701 - IAI46_03910 0.17 -1.0
847,701 - IAI46_03910 0.17 -0.2
847,702 + IAI46_03910 0.17 -0.1
847,702 + IAI46_03910 0.17 +0.5
847,703 - IAI46_03910 0.17 +0.3
847,722 - IAI46_03910 0.20 +1.2
847,722 - IAI46_03910 0.20 +0.2
847,722 - IAI46_03910 0.20 -0.0
847,769 + IAI46_03910 0.26 -0.3
847,770 - IAI46_03910 0.26 +1.9
847,771 + IAI46_03910 0.26 -0.4
847,771 + IAI46_03910 0.26 +1.9
847,771 + IAI46_03910 0.26 -0.5
847,772 - IAI46_03910 0.26 -0.2
847,772 - IAI46_03910 0.26 +0.1
847,815 + IAI46_03910 0.31 +0.6
847,930 + IAI46_03910 0.46 +2.1
847,931 - IAI46_03910 0.46 -0.3
847,931 - IAI46_03910 0.46 -0.0
847,953 - IAI46_03910 0.49 +0.5
847,957 + IAI46_03910 0.49 +0.6
847,957 + IAI46_03910 0.49 +0.6
847,980 - IAI46_03910 0.52 +0.4
848,015 + IAI46_03910 0.57 +0.4
848,033 + IAI46_03910 0.59 +1.1
848,033 + IAI46_03910 0.59 +0.8
848,071 + IAI46_03910 0.64 -0.1
848,157 + IAI46_03910 0.75 +0.2
848,157 + IAI46_03910 0.75 +0.3
848,157 + IAI46_03910 0.75 +0.1
848,158 - IAI46_03910 0.75 +0.6
848,158 - IAI46_03910 0.75 -0.0
848,158 - IAI46_03910 0.75 +0.4
848,201 + IAI46_03910 0.80 -0.1
848,269 + IAI46_03910 0.89 +0.8
848,323 + -0.5
848,357 + -0.1
848,357 + +0.5
848,401 + -0.3
848,402 - +0.5
848,402 - +1.0
848,402 - +0.5
848,468 + -0.6
848,507 + -0.5
848,507 + +0.4
848,507 + +1.2
848,507 + +0.2
848,507 + -0.8
849,920 - -0.1
849,990 - +0.7
849,996 + +0.8
849,997 - -0.9
849,997 - -1.0

Or see this region's nucleotide sequence