Strain Fitness in Serratia liquefaciens MT49 around IAI46_03340

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_03335 and IAI46_03340 are separated by 134 nucleotidesIAI46_03340 and IAI46_03345 are separated by 9 nucleotides IAI46_03335: IAI46_03335 - DASS family sodium-coupled anion symporter, at 720,335 to 721,807 _03335 IAI46_03340: IAI46_03340 - 3-isopropylmalate dehydratase small subunit, at 721,942 to 722,544 _03340 IAI46_03345: IAI46_03345 - 3-isopropylmalate dehydratase large subunit, at 722,554 to 723,954 _03345 Position (kb) 721 722 723Strain fitness (log2 ratio) -2 -1 0 1at 721.064 kb on - strand, within IAI46_03335at 721.080 kb on - strand, within IAI46_03335at 721.088 kb on + strand, within IAI46_03335at 721.089 kb on - strand, within IAI46_03335at 721.203 kb on + strand, within IAI46_03335at 721.354 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.417 kb on + strand, within IAI46_03335at 721.418 kb on - strand, within IAI46_03335at 721.418 kb on - strand, within IAI46_03335at 721.456 kb on + strand, within IAI46_03335at 721.457 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.503 kb on - strand, within IAI46_03335at 721.509 kb on - strand, within IAI46_03335at 721.517 kb on + strand, within IAI46_03335at 721.518 kb on - strand, within IAI46_03335at 721.658 kb on + strand, within IAI46_03335at 721.659 kb on - strand, within IAI46_03335at 721.659 kb on - strand, within IAI46_03335at 721.698 kb on - strandat 721.767 kb on + strandat 721.767 kb on + strandat 721.768 kb on - strandat 721.818 kb on - strandat 721.847 kb on - strandat 721.865 kb on + strandat 721.866 kb on - strandat 721.873 kb on + strandat 721.874 kb on - strandat 721.890 kb on - strandat 721.890 kb on - strandat 721.890 kb on - strandat 721.893 kb on + strandat 721.920 kb on + strandat 721.921 kb on - strandat 721.929 kb on + strandat 721.929 kb on + strandat 721.929 kb on + strandat 721.930 kb on - strandat 721.974 kb on - strandat 721.984 kb on - strandat 722.217 kb on - strand, within IAI46_03340at 722.253 kb on + strand, within IAI46_03340at 722.523 kb on + strandat 722.523 kb on + strandat 722.523 kb on + strandat 722.523 kb on + strandat 722.524 kb on - strandat 722.524 kb on - strandat 722.532 kb on + strandat 722.533 kb on - strandat 722.556 kb on - strandat 722.562 kb on + strandat 722.631 kb on + strandat 722.632 kb on - strandat 722.632 kb on - strandat 722.632 kb on - strandat 722.842 kb on + strand, within IAI46_03345at 722.901 kb on + strand, within IAI46_03345at 722.902 kb on - strand, within IAI46_03345at 722.913 kb on + strand, within IAI46_03345at 722.914 kb on - strand, within IAI46_03345at 722.925 kb on + strand, within IAI46_03345at 722.979 kb on + strand, within IAI46_03345at 722.979 kb on + strand, within IAI46_03345at 722.980 kb on - strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.981 kb on + strand, within IAI46_03345at 722.982 kb on - strand, within IAI46_03345at 722.982 kb on - strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.090 kb on + strand, within IAI46_03345at 723.091 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.128 kb on - strand, within IAI46_03345at 723.260 kb on - strand, within IAI46_03345at 723.420 kb on + strand, within IAI46_03345at 723.421 kb on - strand, within IAI46_03345at 723.421 kb on - strand, within IAI46_03345at 723.423 kb on + strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.424 kb on - strand, within IAI46_03345at 723.520 kb on - strand, within IAI46_03345at 723.520 kb on - strand, within IAI46_03345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
721,064 - IAI46_03335 0.49 +0.9
721,080 - IAI46_03335 0.51 -0.2
721,088 + IAI46_03335 0.51 +0.4
721,089 - IAI46_03335 0.51 -0.3
721,203 + IAI46_03335 0.59 -0.2
721,354 + IAI46_03335 0.69 +0.2
721,417 + IAI46_03335 0.73 -0.1
721,417 + IAI46_03335 0.73 +0.5
721,417 + IAI46_03335 0.73 +0.0
721,417 + IAI46_03335 0.73 +0.4
721,417 + IAI46_03335 0.73 +1.5
721,418 - IAI46_03335 0.74 +0.4
721,418 - IAI46_03335 0.74 +0.3
721,456 + IAI46_03335 0.76 +0.7
721,457 - IAI46_03335 0.76 -0.1
721,503 - IAI46_03335 0.79 +0.0
721,503 - IAI46_03335 0.79 +0.5
721,503 - IAI46_03335 0.79 +0.3
721,503 - IAI46_03335 0.79 +0.3
721,503 - IAI46_03335 0.79 +0.3
721,503 - IAI46_03335 0.79 -0.0
721,509 - IAI46_03335 0.80 +0.4
721,517 + IAI46_03335 0.80 +0.3
721,518 - IAI46_03335 0.80 +1.5
721,658 + IAI46_03335 0.90 +0.3
721,659 - IAI46_03335 0.90 -0.7
721,659 - IAI46_03335 0.90 +0.1
721,698 - +0.4
721,767 + +0.2
721,767 + +0.4
721,768 - +0.7
721,818 - -0.7
721,847 - +0.1
721,865 + +0.8
721,866 - +1.1
721,873 + -0.9
721,874 - -0.1
721,890 - +0.5
721,890 - +0.6
721,890 - +0.4
721,893 + -0.2
721,920 + -0.1
721,921 - +1.1
721,929 + -0.6
721,929 + +0.3
721,929 + -1.4
721,930 - +0.5
721,974 - -0.2
721,984 - -0.2
722,217 - IAI46_03340 0.46 +0.1
722,253 + IAI46_03340 0.52 +0.6
722,523 + -0.0
722,523 + +0.2
722,523 + -0.2
722,523 + -0.6
722,524 - +0.9
722,524 - +0.7
722,532 + -0.9
722,533 - +0.9
722,556 - +0.4
722,562 + +0.1
722,631 + -0.2
722,632 - -0.2
722,632 - +0.0
722,632 - -1.0
722,842 + IAI46_03345 0.21 -1.1
722,901 + IAI46_03345 0.25 -0.3
722,902 - IAI46_03345 0.25 -1.2
722,913 + IAI46_03345 0.26 -0.3
722,914 - IAI46_03345 0.26 -0.4
722,925 + IAI46_03345 0.26 -0.1
722,979 + IAI46_03345 0.30 -2.1
722,979 + IAI46_03345 0.30 -0.7
722,980 - IAI46_03345 0.30 +0.1
722,981 + IAI46_03345 0.30 +0.0
722,981 + IAI46_03345 0.30 -0.2
722,981 + IAI46_03345 0.30 -0.4
722,982 - IAI46_03345 0.31 -1.8
722,982 - IAI46_03345 0.31 -0.8
723,090 + IAI46_03345 0.38 -0.2
723,090 + IAI46_03345 0.38 -0.7
723,090 + IAI46_03345 0.38 +0.0
723,091 - IAI46_03345 0.38 -0.3
723,128 - IAI46_03345 0.41 -0.2
723,128 - IAI46_03345 0.41 -0.8
723,128 - IAI46_03345 0.41 -0.6
723,128 - IAI46_03345 0.41 -0.7
723,260 - IAI46_03345 0.50 -0.8
723,420 + IAI46_03345 0.62 -1.1
723,421 - IAI46_03345 0.62 -1.9
723,421 - IAI46_03345 0.62 +0.1
723,423 + IAI46_03345 0.62 -0.6
723,424 - IAI46_03345 0.62 +0.4
723,424 - IAI46_03345 0.62 -0.1
723,424 - IAI46_03345 0.62 +0.3
723,424 - IAI46_03345 0.62 -1.6
723,424 - IAI46_03345 0.62 +0.6
723,520 - IAI46_03345 0.69 +0.0
723,520 - IAI46_03345 0.69 -0.8

Or see this region's nucleotide sequence