Strain Fitness in Serratia liquefaciens MT49 around IAI46_02935

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02925 and IAI46_02930 are separated by 62 nucleotidesIAI46_02930 and IAI46_02935 are separated by 104 nucleotidesIAI46_02935 and IAI46_02940 are separated by 104 nucleotides IAI46_02925: IAI46_02925 - purine-nucleoside phosphorylase, at 624,581 to 625,312 _02925 IAI46_02930: IAI46_02930 - transcriptional regulator, at 625,375 to 625,590 _02930 IAI46_02935: IAI46_02935 - YtjB family periplasmic protein, at 625,695 to 626,369 _02935 IAI46_02940: IAI46_02940 - phosphoserine phosphatase, at 626,474 to 627,451 _02940 Position (kb) 625 626 627Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 624.738 kb on - strand, within IAI46_02925at 624.738 kb on - strand, within IAI46_02925at 624.773 kb on - strand, within IAI46_02925at 624.773 kb on - strand, within IAI46_02925at 624.797 kb on + strand, within IAI46_02925at 624.798 kb on - strand, within IAI46_02925at 624.798 kb on - strand, within IAI46_02925at 624.901 kb on + strand, within IAI46_02925at 624.988 kb on + strand, within IAI46_02925at 624.988 kb on + strand, within IAI46_02925at 624.989 kb on - strand, within IAI46_02925at 625.061 kb on + strand, within IAI46_02925at 625.063 kb on + strand, within IAI46_02925at 625.063 kb on + strand, within IAI46_02925at 625.100 kb on + strand, within IAI46_02925at 625.101 kb on - strand, within IAI46_02925at 625.139 kb on + strand, within IAI46_02925at 625.139 kb on + strand, within IAI46_02925at 625.140 kb on - strand, within IAI46_02925at 625.140 kb on - strand, within IAI46_02925at 625.140 kb on - strand, within IAI46_02925at 625.196 kb on - strand, within IAI46_02925at 625.311 kb on - strandat 625.317 kb on - strandat 625.354 kb on + strandat 625.355 kb on - strandat 625.355 kb on - strandat 625.355 kb on - strandat 625.355 kb on - strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.367 kb on - strandat 625.367 kb on - strandat 625.367 kb on - strandat 625.374 kb on + strandat 625.375 kb on - strandat 625.375 kb on - strandat 625.375 kb on - strandat 625.493 kb on + strand, within IAI46_02930at 625.506 kb on + strand, within IAI46_02930at 625.525 kb on + strand, within IAI46_02930at 625.526 kb on - strand, within IAI46_02930at 625.559 kb on - strand, within IAI46_02930at 625.570 kb on + strandat 625.570 kb on + strandat 625.622 kb on - strandat 625.685 kb on + strandat 625.686 kb on - strandat 625.686 kb on - strandat 625.697 kb on - strandat 625.742 kb on + strandat 625.743 kb on - strandat 625.763 kb on + strand, within IAI46_02935at 625.763 kb on + strand, within IAI46_02935at 626.015 kb on + strand, within IAI46_02935at 626.040 kb on + strand, within IAI46_02935at 626.042 kb on + strand, within IAI46_02935at 626.042 kb on + strand, within IAI46_02935at 626.042 kb on + strand, within IAI46_02935at 626.042 kb on + strand, within IAI46_02935at 626.043 kb on - strand, within IAI46_02935at 626.046 kb on + strand, within IAI46_02935at 626.046 kb on + strand, within IAI46_02935at 626.046 kb on + strand, within IAI46_02935at 626.046 kb on + strand, within IAI46_02935at 626.046 kb on + strand, within IAI46_02935at 626.046 kb on + strand, within IAI46_02935at 626.046 kb on + strand, within IAI46_02935at 626.047 kb on - strand, within IAI46_02935at 626.047 kb on - strand, within IAI46_02935at 626.047 kb on - strand, within IAI46_02935at 626.047 kb on - strand, within IAI46_02935at 626.047 kb on - strand, within IAI46_02935at 626.047 kb on - strand, within IAI46_02935at 626.047 kb on - strand, within IAI46_02935at 626.071 kb on - strand, within IAI46_02935at 626.358 kb on - strandat 626.398 kb on + strandat 626.398 kb on + strandat 626.398 kb on + strandat 626.398 kb on + strandat 626.399 kb on - strandat 626.399 kb on - strandat 626.421 kb on + strandat 626.426 kb on + strandat 626.426 kb on + strandat 626.427 kb on - strandat 626.427 kb on - strandat 626.427 kb on - strandat 626.445 kb on - strandat 626.469 kb on + strandat 626.483 kb on - strandat 626.483 kb on - strandat 626.492 kb on + strandat 626.492 kb on + strandat 626.493 kb on - strandat 626.599 kb on - strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.604 kb on - strand, within IAI46_02940at 626.604 kb on - strand, within IAI46_02940at 626.604 kb on - strand, within IAI46_02940at 626.688 kb on + strand, within IAI46_02940at 626.696 kb on + strand, within IAI46_02940at 626.696 kb on + strand, within IAI46_02940at 626.697 kb on - strand, within IAI46_02940at 626.966 kb on - strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.102 kb on - strand, within IAI46_02940at 627.102 kb on - strand, within IAI46_02940at 627.102 kb on - strand, within IAI46_02940at 627.104 kb on + strand, within IAI46_02940at 627.113 kb on + strand, within IAI46_02940at 627.114 kb on - strand, within IAI46_02940at 627.342 kb on - strand, within IAI46_02940at 627.362 kb on + strandat 627.362 kb on + strandat 627.362 kb on + strandat 627.363 kb on - strandat 627.363 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
624,738 - IAI46_02925 0.21 -0.0
624,738 - IAI46_02925 0.21 -0.1
624,773 - IAI46_02925 0.26 +1.1
624,773 - IAI46_02925 0.26 -0.0
624,797 + IAI46_02925 0.30 +0.3
624,798 - IAI46_02925 0.30 -0.3
624,798 - IAI46_02925 0.30 +0.3
624,901 + IAI46_02925 0.44 +0.1
624,988 + IAI46_02925 0.56 -0.1
624,988 + IAI46_02925 0.56 +0.2
624,989 - IAI46_02925 0.56 +0.1
625,061 + IAI46_02925 0.66 -0.3
625,063 + IAI46_02925 0.66 -0.9
625,063 + IAI46_02925 0.66 +1.0
625,100 + IAI46_02925 0.71 +0.3
625,101 - IAI46_02925 0.71 -0.1
625,139 + IAI46_02925 0.76 +0.6
625,139 + IAI46_02925 0.76 -1.1
625,140 - IAI46_02925 0.76 +0.4
625,140 - IAI46_02925 0.76 +0.4
625,140 - IAI46_02925 0.76 -0.8
625,196 - IAI46_02925 0.84 +0.8
625,311 - +0.1
625,317 - +0.4
625,354 + +0.4
625,355 - +0.4
625,355 - +0.2
625,355 - +0.3
625,355 - +0.8
625,366 + +0.5
625,366 + +0.1
625,366 + +0.5
625,366 + +0.6
625,366 + -1.0
625,366 + -0.3
625,367 - +0.9
625,367 - -0.1
625,367 - +0.2
625,374 + +1.4
625,375 - +0.5
625,375 - +0.6
625,375 - +0.7
625,493 + IAI46_02930 0.55 +0.7
625,506 + IAI46_02930 0.61 +0.3
625,525 + IAI46_02930 0.69 +0.5
625,526 - IAI46_02930 0.70 +0.2
625,559 - IAI46_02930 0.85 +0.2
625,570 + +0.2
625,570 + +1.3
625,622 - +0.1
625,685 + +1.5
625,686 - -0.3
625,686 - +0.1
625,697 - -0.1
625,742 + -0.5
625,743 - -1.6
625,763 + IAI46_02935 0.10 +0.8
625,763 + IAI46_02935 0.10 -1.3
626,015 + IAI46_02935 0.47 -0.4
626,040 + IAI46_02935 0.51 +1.1
626,042 + IAI46_02935 0.51 +0.4
626,042 + IAI46_02935 0.51 -1.7
626,042 + IAI46_02935 0.51 +0.3
626,042 + IAI46_02935 0.51 +0.3
626,043 - IAI46_02935 0.52 +0.0
626,046 + IAI46_02935 0.52 -0.4
626,046 + IAI46_02935 0.52 +0.1
626,046 + IAI46_02935 0.52 +1.0
626,046 + IAI46_02935 0.52 +0.0
626,046 + IAI46_02935 0.52 -0.4
626,046 + IAI46_02935 0.52 +0.3
626,046 + IAI46_02935 0.52 +0.6
626,047 - IAI46_02935 0.52 +0.8
626,047 - IAI46_02935 0.52 +0.8
626,047 - IAI46_02935 0.52 -0.1
626,047 - IAI46_02935 0.52 +0.6
626,047 - IAI46_02935 0.52 +0.3
626,047 - IAI46_02935 0.52 -1.0
626,047 - IAI46_02935 0.52 -0.1
626,071 - IAI46_02935 0.56 +0.1
626,358 - -0.2
626,398 + +0.1
626,398 + +0.3
626,398 + +0.1
626,398 + +0.1
626,399 - +0.1
626,399 - +0.0
626,421 + -0.1
626,426 + +0.1
626,426 + +0.8
626,427 - -2.4
626,427 - -1.3
626,427 - -1.2
626,445 - -0.8
626,469 + -0.6
626,483 - -1.6
626,483 - -1.5
626,492 + -1.2
626,492 + -1.1
626,493 - -0.7
626,599 - IAI46_02940 0.13 -1.6
626,601 + IAI46_02940 0.13 -4.0
626,601 + IAI46_02940 0.13 -1.7
626,601 + IAI46_02940 0.13 -1.9
626,601 + IAI46_02940 0.13 +0.7
626,602 - IAI46_02940 0.13 -1.3
626,602 - IAI46_02940 0.13 -1.0
626,602 - IAI46_02940 0.13 -1.1
626,602 - IAI46_02940 0.13 -2.2
626,602 - IAI46_02940 0.13 -2.3
626,602 - IAI46_02940 0.13 -1.8
626,602 - IAI46_02940 0.13 +0.3
626,604 - IAI46_02940 0.13 -3.1
626,604 - IAI46_02940 0.13 -1.9
626,604 - IAI46_02940 0.13 -2.8
626,688 + IAI46_02940 0.22 -1.2
626,696 + IAI46_02940 0.23 -1.7
626,696 + IAI46_02940 0.23 -3.2
626,697 - IAI46_02940 0.23 -2.4
626,966 - IAI46_02940 0.50 -2.8
627,101 + IAI46_02940 0.64 -1.0
627,101 + IAI46_02940 0.64 -3.5
627,101 + IAI46_02940 0.64 -2.9
627,101 + IAI46_02940 0.64 -2.8
627,102 - IAI46_02940 0.64 -2.1
627,102 - IAI46_02940 0.64 -1.7
627,102 - IAI46_02940 0.64 +0.0
627,104 + IAI46_02940 0.64 -0.9
627,113 + IAI46_02940 0.65 -1.1
627,114 - IAI46_02940 0.65 -1.5
627,342 - IAI46_02940 0.89 -0.6
627,362 + -1.6
627,362 + -2.6
627,362 + -2.2
627,363 - -1.5
627,363 - -0.7

Or see this region's nucleotide sequence