Strain Fitness in Serratia liquefaciens MT49 around IAI46_02585

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02580 and IAI46_02585 are separated by 57 nucleotidesIAI46_02585 and IAI46_02590 are separated by 80 nucleotidesIAI46_02590 and IAI46_02595 are separated by 16 nucleotides IAI46_02580: IAI46_02580 - porin, at 556,254 to 557,390 _02580 IAI46_02585: IAI46_02585 - helix-turn-helix transcriptional regulator, at 557,448 to 558,302 _02585 IAI46_02590: IAI46_02590 - hypothetical protein, at 558,383 to 558,778 _02590 IAI46_02595: IAI46_02595 - helix-turn-helix domain-containing protein, at 558,795 to 559,673 _02595 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 556.448 kb on + strand, within IAI46_02580at 556.449 kb on - strand, within IAI46_02580at 556.494 kb on + strand, within IAI46_02580at 556.494 kb on + strand, within IAI46_02580at 556.495 kb on - strand, within IAI46_02580at 556.495 kb on - strand, within IAI46_02580at 556.530 kb on + strand, within IAI46_02580at 556.531 kb on - strand, within IAI46_02580at 556.578 kb on + strand, within IAI46_02580at 556.578 kb on + strand, within IAI46_02580at 556.579 kb on - strand, within IAI46_02580at 556.615 kb on + strand, within IAI46_02580at 556.616 kb on - strand, within IAI46_02580at 556.617 kb on + strand, within IAI46_02580at 556.617 kb on + strand, within IAI46_02580at 556.617 kb on + strand, within IAI46_02580at 556.618 kb on - strand, within IAI46_02580at 556.618 kb on - strand, within IAI46_02580at 556.652 kb on - strand, within IAI46_02580at 556.677 kb on + strand, within IAI46_02580at 556.677 kb on + strand, within IAI46_02580at 556.678 kb on - strand, within IAI46_02580at 556.678 kb on - strand, within IAI46_02580at 556.697 kb on + strand, within IAI46_02580at 556.776 kb on - strand, within IAI46_02580at 556.797 kb on + strand, within IAI46_02580at 556.798 kb on - strand, within IAI46_02580at 556.798 kb on - strand, within IAI46_02580at 556.798 kb on - strand, within IAI46_02580at 556.825 kb on + strand, within IAI46_02580at 556.825 kb on + strand, within IAI46_02580at 556.827 kb on + strand, within IAI46_02580at 556.827 kb on + strand, within IAI46_02580at 556.827 kb on + strand, within IAI46_02580at 556.828 kb on - strand, within IAI46_02580at 556.828 kb on - strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.841 kb on - strand, within IAI46_02580at 556.871 kb on + strand, within IAI46_02580at 556.918 kb on - strand, within IAI46_02580at 556.919 kb on + strand, within IAI46_02580at 556.919 kb on + strand, within IAI46_02580at 556.936 kb on + strand, within IAI46_02580at 556.936 kb on + strand, within IAI46_02580at 556.937 kb on - strand, within IAI46_02580at 556.954 kb on - strand, within IAI46_02580at 556.954 kb on - strand, within IAI46_02580at 556.959 kb on + strand, within IAI46_02580at 556.959 kb on + strand, within IAI46_02580at 556.960 kb on - strand, within IAI46_02580at 556.989 kb on + strand, within IAI46_02580at 556.989 kb on + strand, within IAI46_02580at 556.989 kb on + strand, within IAI46_02580at 556.991 kb on + strand, within IAI46_02580at 556.991 kb on + strand, within IAI46_02580at 556.992 kb on - strand, within IAI46_02580at 557.005 kb on - strand, within IAI46_02580at 557.055 kb on + strand, within IAI46_02580at 557.056 kb on - strand, within IAI46_02580at 557.057 kb on + strand, within IAI46_02580at 557.076 kb on + strand, within IAI46_02580at 557.077 kb on - strand, within IAI46_02580at 557.077 kb on - strand, within IAI46_02580at 557.088 kb on + strand, within IAI46_02580at 557.088 kb on + strand, within IAI46_02580at 557.088 kb on + strand, within IAI46_02580at 557.089 kb on - strand, within IAI46_02580at 557.111 kb on + strand, within IAI46_02580at 557.111 kb on + strand, within IAI46_02580at 557.112 kb on - strand, within IAI46_02580at 557.112 kb on - strand, within IAI46_02580at 557.112 kb on - strand, within IAI46_02580at 557.149 kb on + strand, within IAI46_02580at 557.149 kb on + strand, within IAI46_02580at 557.150 kb on - strand, within IAI46_02580at 557.166 kb on + strand, within IAI46_02580at 557.169 kb on - strand, within IAI46_02580at 557.174 kb on + strand, within IAI46_02580at 557.177 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.272 kb on - strand, within IAI46_02580at 557.313 kb on + strandat 557.313 kb on + strandat 557.313 kb on + strandat 557.313 kb on + strandat 557.314 kb on - strandat 557.314 kb on - strandat 557.314 kb on - strandat 557.379 kb on + strandat 557.445 kb on - strandat 557.566 kb on + strand, within IAI46_02585at 557.567 kb on - strand, within IAI46_02585at 557.567 kb on - strand, within IAI46_02585at 557.592 kb on + strand, within IAI46_02585at 557.700 kb on - strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.956 kb on + strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 558.010 kb on + strand, within IAI46_02585at 558.010 kb on + strand, within IAI46_02585at 558.134 kb on + strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.136 kb on + strand, within IAI46_02585at 558.137 kb on - strand, within IAI46_02585at 558.349 kb on - strandat 558.390 kb on + strandat 558.390 kb on + strandat 558.391 kb on - strandat 558.451 kb on + strand, within IAI46_02590at 558.526 kb on + strand, within IAI46_02590at 558.527 kb on - strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.622 kb on + strand, within IAI46_02590at 558.623 kb on - strand, within IAI46_02590at 558.623 kb on - strand, within IAI46_02590at 558.777 kb on - strandat 558.777 kb on - strandat 558.799 kb on - strandat 558.811 kb on + strandat 558.812 kb on - strandat 558.873 kb on - strandat 558.892 kb on - strand, within IAI46_02595at 558.939 kb on - strand, within IAI46_02595at 558.939 kb on - strand, within IAI46_02595at 558.939 kb on - strand, within IAI46_02595at 558.951 kb on + strand, within IAI46_02595at 558.951 kb on + strand, within IAI46_02595at 558.951 kb on + strand, within IAI46_02595at 559.029 kb on - strand, within IAI46_02595at 559.033 kb on - strand, within IAI46_02595at 559.181 kb on + strand, within IAI46_02595at 559.181 kb on + strand, within IAI46_02595at 559.181 kb on + strand, within IAI46_02595at 559.182 kb on - strand, within IAI46_02595at 559.182 kb on - strand, within IAI46_02595at 559.182 kb on - strand, within IAI46_02595at 559.278 kb on + strand, within IAI46_02595

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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556,448 + IAI46_02580 0.17 -0.2
556,449 - IAI46_02580 0.17 +0.4
556,494 + IAI46_02580 0.21 -0.2
556,494 + IAI46_02580 0.21 -0.0
556,495 - IAI46_02580 0.21 +1.0
556,495 - IAI46_02580 0.21 -0.3
556,530 + IAI46_02580 0.24 +0.5
556,531 - IAI46_02580 0.24 -0.7
556,578 + IAI46_02580 0.28 -1.4
556,578 + IAI46_02580 0.28 -0.8
556,579 - IAI46_02580 0.29 +1.1
556,615 + IAI46_02580 0.32 -0.9
556,616 - IAI46_02580 0.32 -0.1
556,617 + IAI46_02580 0.32 -0.5
556,617 + IAI46_02580 0.32 -0.1
556,617 + IAI46_02580 0.32 +0.4
556,618 - IAI46_02580 0.32 -1.1
556,618 - IAI46_02580 0.32 -0.2
556,652 - IAI46_02580 0.35 -1.1
556,677 + IAI46_02580 0.37 +0.6
556,677 + IAI46_02580 0.37 +1.1
556,678 - IAI46_02580 0.37 +0.8
556,678 - IAI46_02580 0.37 +0.1
556,697 + IAI46_02580 0.39 -0.1
556,776 - IAI46_02580 0.46 +0.6
556,797 + IAI46_02580 0.48 -0.2
556,798 - IAI46_02580 0.48 +0.1
556,798 - IAI46_02580 0.48 +1.1
556,798 - IAI46_02580 0.48 -0.5
556,825 + IAI46_02580 0.50 +0.0
556,825 + IAI46_02580 0.50 +0.3
556,827 + IAI46_02580 0.50 +0.8
556,827 + IAI46_02580 0.50 +0.5
556,827 + IAI46_02580 0.50 +0.3
556,828 - IAI46_02580 0.50 -0.1
556,828 - IAI46_02580 0.50 +1.8
556,836 + IAI46_02580 0.51 +0.7
556,836 + IAI46_02580 0.51 +0.3
556,836 + IAI46_02580 0.51 +0.5
556,836 + IAI46_02580 0.51 +1.1
556,841 - IAI46_02580 0.52 +0.3
556,871 + IAI46_02580 0.54 +0.4
556,918 - IAI46_02580 0.58 -0.1
556,919 + IAI46_02580 0.58 +0.3
556,919 + IAI46_02580 0.58 -0.7
556,936 + IAI46_02580 0.60 +0.3
556,936 + IAI46_02580 0.60 -0.7
556,937 - IAI46_02580 0.60 +0.4
556,954 - IAI46_02580 0.62 -0.3
556,954 - IAI46_02580 0.62 +0.3
556,959 + IAI46_02580 0.62 +0.1
556,959 + IAI46_02580 0.62 +0.5
556,960 - IAI46_02580 0.62 -0.5
556,989 + IAI46_02580 0.65 -0.6
556,989 + IAI46_02580 0.65 +0.2
556,989 + IAI46_02580 0.65 -0.1
556,991 + IAI46_02580 0.65 +0.4
556,991 + IAI46_02580 0.65 +0.3
556,992 - IAI46_02580 0.65 -0.0
557,005 - IAI46_02580 0.66 -0.4
557,055 + IAI46_02580 0.70 -1.0
557,056 - IAI46_02580 0.71 +0.4
557,057 + IAI46_02580 0.71 -0.0
557,076 + IAI46_02580 0.72 +0.6
557,077 - IAI46_02580 0.72 +1.2
557,077 - IAI46_02580 0.72 -0.1
557,088 + IAI46_02580 0.73 +1.0
557,088 + IAI46_02580 0.73 +0.7
557,088 + IAI46_02580 0.73 +0.4
557,089 - IAI46_02580 0.73 +0.1
557,111 + IAI46_02580 0.75 -0.2
557,111 + IAI46_02580 0.75 +0.8
557,112 - IAI46_02580 0.75 -2.1
557,112 - IAI46_02580 0.75 -2.6
557,112 - IAI46_02580 0.75 +0.5
557,149 + IAI46_02580 0.79 +0.5
557,149 + IAI46_02580 0.79 +0.0
557,150 - IAI46_02580 0.79 -0.6
557,166 + IAI46_02580 0.80 +1.2
557,169 - IAI46_02580 0.80 +0.1
557,174 + IAI46_02580 0.81 +1.8
557,177 + IAI46_02580 0.81 +0.9
557,211 + IAI46_02580 0.84 -0.0
557,211 + IAI46_02580 0.84 +0.7
557,211 + IAI46_02580 0.84 +0.8
557,211 + IAI46_02580 0.84 -0.1
557,211 + IAI46_02580 0.84 +0.5
557,212 - IAI46_02580 0.84 -0.4
557,212 - IAI46_02580 0.84 -0.1
557,212 - IAI46_02580 0.84 -0.4
557,212 - IAI46_02580 0.84 +0.3
557,212 - IAI46_02580 0.84 +0.5
557,272 - IAI46_02580 0.90 -0.6
557,313 + +0.8
557,313 + -0.2
557,313 + +0.2
557,313 + +0.4
557,314 - +0.2
557,314 - -1.5
557,314 - +0.5
557,379 + +0.4
557,445 - +0.5
557,566 + IAI46_02585 0.14 -1.3
557,567 - IAI46_02585 0.14 +0.6
557,567 - IAI46_02585 0.14 +0.7
557,592 + IAI46_02585 0.17 -0.4
557,700 - IAI46_02585 0.29 +0.5
557,893 + IAI46_02585 0.52 -1.5
557,893 + IAI46_02585 0.52 +0.3
557,893 + IAI46_02585 0.52 +0.0
557,956 + IAI46_02585 0.59 -0.3
557,958 - IAI46_02585 0.60 +0.4
557,958 - IAI46_02585 0.60 +0.2
557,958 - IAI46_02585 0.60 -0.1
557,958 - IAI46_02585 0.60 +0.2
558,010 + IAI46_02585 0.66 -0.2
558,010 + IAI46_02585 0.66 +0.5
558,134 + IAI46_02585 0.80 -0.2
558,135 - IAI46_02585 0.80 +0.6
558,135 - IAI46_02585 0.80 -0.5
558,135 - IAI46_02585 0.80 +0.6
558,136 + IAI46_02585 0.80 +0.2
558,137 - IAI46_02585 0.81 -0.5
558,349 - +0.1
558,390 + -1.3
558,390 + +0.2
558,391 - +0.4
558,451 + IAI46_02590 0.17 +0.0
558,526 + IAI46_02590 0.36 -0.0
558,527 - IAI46_02590 0.36 +0.1
558,622 + IAI46_02590 0.60 +0.2
558,622 + IAI46_02590 0.60 +0.3
558,622 + IAI46_02590 0.60 +0.5
558,622 + IAI46_02590 0.60 +0.8
558,623 - IAI46_02590 0.61 -0.3
558,623 - IAI46_02590 0.61 +1.6
558,777 - -0.2
558,777 - +0.8
558,799 - -1.5
558,811 + -0.0
558,812 - +1.6
558,873 - -0.0
558,892 - IAI46_02595 0.11 -0.1
558,939 - IAI46_02595 0.16 -0.3
558,939 - IAI46_02595 0.16 -0.7
558,939 - IAI46_02595 0.16 +0.3
558,951 + IAI46_02595 0.18 -0.2
558,951 + IAI46_02595 0.18 +0.7
558,951 + IAI46_02595 0.18 +0.1
559,029 - IAI46_02595 0.27 +0.3
559,033 - IAI46_02595 0.27 +0.4
559,181 + IAI46_02595 0.44 -0.1
559,181 + IAI46_02595 0.44 -0.2
559,181 + IAI46_02595 0.44 -1.1
559,182 - IAI46_02595 0.44 -1.4
559,182 - IAI46_02595 0.44 +0.2
559,182 - IAI46_02595 0.44 -0.3
559,278 + IAI46_02595 0.55 +0.5

Or see this region's nucleotide sequence