Strain Fitness in Serratia liquefaciens MT49 around IAI46_01335

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01325 and IAI46_01330 are separated by 99 nucleotidesIAI46_01330 and IAI46_01335 are separated by 40 nucleotidesIAI46_01335 and IAI46_01340 are separated by 9 nucleotidesIAI46_01340 and IAI46_01345 are separated by 48 nucleotides IAI46_01325: IAI46_01325 - Rsd/AlgQ family anti-sigma factor, at 292,049 to 292,552 _01325 IAI46_01330: IAI46_01330 - NAD(+) diphosphatase, at 292,652 to 293,419 _01330 IAI46_01335: IAI46_01335 - uroporphyrinogen decarboxylase, at 293,460 to 294,524 _01335 IAI46_01340: IAI46_01340 - deoxyribonuclease V, at 294,534 to 295,220 _01340 IAI46_01345: IAI46_01345 - YjaG family protein, at 295,269 to 295,859 _01345 Position (kb) 293 294 295Strain fitness (log2 ratio) -1 0 1 2at 292.500 kb on - strand, within IAI46_01325at 292.500 kb on - strand, within IAI46_01325at 292.507 kb on + strandat 292.507 kb on + strandat 292.508 kb on - strandat 292.508 kb on - strandat 292.510 kb on + strandat 292.511 kb on - strandat 292.511 kb on - strandat 292.569 kb on - strandat 292.941 kb on - strand, within IAI46_01330at 292.941 kb on - strand, within IAI46_01330at 292.950 kb on - strand, within IAI46_01330at 293.114 kb on - strand, within IAI46_01330at 293.188 kb on + strand, within IAI46_01330at 293.189 kb on - strand, within IAI46_01330at 293.191 kb on + strand, within IAI46_01330at 293.263 kb on + strand, within IAI46_01330at 293.264 kb on - strand, within IAI46_01330at 293.273 kb on + strand, within IAI46_01330at 293.328 kb on - strand, within IAI46_01330at 293.398 kb on - strandat 293.398 kb on - strandat 293.403 kb on + strandat 293.403 kb on + strandat 293.417 kb on + strandat 293.430 kb on + strandat 294.513 kb on + strandat 294.513 kb on + strandat 294.523 kb on - strandat 294.538 kb on + strandat 294.538 kb on + strandat 294.538 kb on + strandat 294.538 kb on + strandat 294.539 kb on - strandat 294.539 kb on - strandat 294.539 kb on - strandat 294.542 kb on + strandat 294.542 kb on + strandat 294.542 kb on + strandat 294.543 kb on - strandat 294.543 kb on - strandat 294.554 kb on - strandat 294.594 kb on + strandat 294.595 kb on - strandat 294.595 kb on - strandat 294.680 kb on + strand, within IAI46_01340at 294.697 kb on - strand, within IAI46_01340at 294.753 kb on + strand, within IAI46_01340at 294.753 kb on + strand, within IAI46_01340at 294.754 kb on - strand, within IAI46_01340at 294.754 kb on - strand, within IAI46_01340at 294.754 kb on - strand, within IAI46_01340at 294.754 kb on - strand, within IAI46_01340at 294.783 kb on + strand, within IAI46_01340at 294.783 kb on + strand, within IAI46_01340at 294.854 kb on + strand, within IAI46_01340at 294.854 kb on + strand, within IAI46_01340at 294.855 kb on - strand, within IAI46_01340at 294.910 kb on + strand, within IAI46_01340at 295.029 kb on - strand, within IAI46_01340at 295.029 kb on - strand, within IAI46_01340at 295.029 kb on - strand, within IAI46_01340at 295.043 kb on + strand, within IAI46_01340at 295.055 kb on + strand, within IAI46_01340at 295.055 kb on + strand, within IAI46_01340at 295.056 kb on - strand, within IAI46_01340at 295.061 kb on + strand, within IAI46_01340at 295.102 kb on + strand, within IAI46_01340at 295.102 kb on + strand, within IAI46_01340at 295.256 kb on - strandat 295.267 kb on + strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.273 kb on + strandat 295.277 kb on + strandat 295.331 kb on + strand, within IAI46_01345at 295.332 kb on - strand, within IAI46_01345at 295.332 kb on - strand, within IAI46_01345at 295.332 kb on - strand, within IAI46_01345at 295.352 kb on + strand, within IAI46_01345at 295.352 kb on + strand, within IAI46_01345at 295.353 kb on - strand, within IAI46_01345at 295.356 kb on + strand, within IAI46_01345at 295.357 kb on - strand, within IAI46_01345at 295.410 kb on + strand, within IAI46_01345

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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292,500 - IAI46_01325 0.89 -0.2
292,500 - IAI46_01325 0.89 -0.3
292,507 + +0.5
292,507 + +1.0
292,508 - +0.2
292,508 - +0.8
292,510 + +1.6
292,511 - +0.8
292,511 - +0.4
292,569 - +1.1
292,941 - IAI46_01330 0.38 -0.4
292,941 - IAI46_01330 0.38 +0.5
292,950 - IAI46_01330 0.39 +0.2
293,114 - IAI46_01330 0.60 +2.5
293,188 + IAI46_01330 0.70 +0.5
293,189 - IAI46_01330 0.70 -0.7
293,191 + IAI46_01330 0.70 +0.3
293,263 + IAI46_01330 0.80 -0.4
293,264 - IAI46_01330 0.80 +0.7
293,273 + IAI46_01330 0.81 +0.0
293,328 - IAI46_01330 0.88 +0.3
293,398 - -0.4
293,398 - -0.3
293,403 + -0.1
293,403 + +0.0
293,417 + +0.9
293,430 + +0.4
294,513 + +0.2
294,513 + +0.5
294,523 - -0.2
294,538 + +0.4
294,538 + +0.4
294,538 + +0.3
294,538 + +0.0
294,539 - -0.0
294,539 - -1.7
294,539 - -0.7
294,542 + -0.1
294,542 + +1.5
294,542 + -1.7
294,543 - -0.8
294,543 - -0.2
294,554 - -0.3
294,594 + +0.3
294,595 - -0.1
294,595 - +0.4
294,680 + IAI46_01340 0.21 -0.0
294,697 - IAI46_01340 0.24 +1.5
294,753 + IAI46_01340 0.32 +0.3
294,753 + IAI46_01340 0.32 +0.3
294,754 - IAI46_01340 0.32 -0.3
294,754 - IAI46_01340 0.32 -0.7
294,754 - IAI46_01340 0.32 -0.7
294,754 - IAI46_01340 0.32 -0.5
294,783 + IAI46_01340 0.36 -0.4
294,783 + IAI46_01340 0.36 -0.9
294,854 + IAI46_01340 0.47 +0.3
294,854 + IAI46_01340 0.47 +0.0
294,855 - IAI46_01340 0.47 +0.5
294,910 + IAI46_01340 0.55 +0.5
295,029 - IAI46_01340 0.72 -0.2
295,029 - IAI46_01340 0.72 -0.2
295,029 - IAI46_01340 0.72 +1.3
295,043 + IAI46_01340 0.74 +0.5
295,055 + IAI46_01340 0.76 -0.0
295,055 + IAI46_01340 0.76 +0.4
295,056 - IAI46_01340 0.76 -0.6
295,061 + IAI46_01340 0.77 +0.4
295,102 + IAI46_01340 0.83 -0.4
295,102 + IAI46_01340 0.83 +0.9
295,256 - +0.5
295,267 + -0.4
295,268 - -0.7
295,268 - -0.8
295,268 - -0.5
295,268 - +0.2
295,268 - +1.5
295,273 + +0.9
295,277 + -0.1
295,331 + IAI46_01345 0.10 -0.7
295,332 - IAI46_01345 0.11 +0.4
295,332 - IAI46_01345 0.11 -0.6
295,332 - IAI46_01345 0.11 -1.4
295,352 + IAI46_01345 0.14 +0.6
295,352 + IAI46_01345 0.14 +1.0
295,353 - IAI46_01345 0.14 -0.1
295,356 + IAI46_01345 0.15 -0.6
295,357 - IAI46_01345 0.15 -0.2
295,410 + IAI46_01345 0.24 +0.7

Or see this region's nucleotide sequence