Strain Fitness in Serratia liquefaciens MT49 around IAI46_01190

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01185 and IAI46_01190 are separated by 45 nucleotidesIAI46_01190 and IAI46_01195 are separated by 220 nucleotides IAI46_01185: IAI46_01185 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 264,668 to 265,630 _01185 IAI46_01190: IAI46_01190 - type I pantothenate kinase, at 265,676 to 266,626 _01190 IAI46_01195: IAI46_01195 - GNAT family N-acetyltransferase, at 266,847 to 267,395 _01195 Position (kb) 265 266 267Strain fitness (log2 ratio) -2 -1 0 1at 265.614 kb on + strandat 265.628 kb on + strandat 265.653 kb on + strandat 266.627 kb on - strandat 266.685 kb on - strandat 266.701 kb on - strandat 266.701 kb on - strandat 266.704 kb on - strandat 266.704 kb on - strandat 266.704 kb on - strandat 266.705 kb on + strandat 266.705 kb on + strandat 266.705 kb on + strandat 266.706 kb on - strandat 266.706 kb on - strandat 266.764 kb on + strandat 266.765 kb on - strandat 266.896 kb on + strandat 266.897 kb on - strandat 266.899 kb on + strandat 266.900 kb on - strandat 266.900 kb on - strandat 266.900 kb on - strandat 266.917 kb on + strand, within IAI46_01195at 266.917 kb on + strand, within IAI46_01195at 266.917 kb on + strand, within IAI46_01195at 266.917 kb on + strand, within IAI46_01195at 266.918 kb on - strand, within IAI46_01195at 266.918 kb on - strand, within IAI46_01195at 266.918 kb on - strand, within IAI46_01195at 266.918 kb on - strand, within IAI46_01195at 266.920 kb on + strand, within IAI46_01195at 266.920 kb on + strand, within IAI46_01195at 266.920 kb on + strand, within IAI46_01195at 266.921 kb on - strand, within IAI46_01195at 266.921 kb on - strand, within IAI46_01195at 266.921 kb on - strand, within IAI46_01195at 266.921 kb on - strand, within IAI46_01195at 266.921 kb on - strand, within IAI46_01195at 266.941 kb on + strand, within IAI46_01195at 266.942 kb on - strand, within IAI46_01195at 266.969 kb on - strand, within IAI46_01195at 266.984 kb on - strand, within IAI46_01195at 267.022 kb on + strand, within IAI46_01195at 267.022 kb on + strand, within IAI46_01195at 267.023 kb on - strand, within IAI46_01195at 267.117 kb on + strand, within IAI46_01195at 267.117 kb on + strand, within IAI46_01195at 267.118 kb on - strand, within IAI46_01195at 267.174 kb on + strand, within IAI46_01195at 267.174 kb on + strand, within IAI46_01195at 267.175 kb on - strand, within IAI46_01195at 267.175 kb on - strand, within IAI46_01195at 267.259 kb on + strand, within IAI46_01195at 267.259 kb on + strand, within IAI46_01195at 267.259 kb on + strand, within IAI46_01195at 267.259 kb on + strand, within IAI46_01195at 267.259 kb on + strand, within IAI46_01195at 267.259 kb on + strand, within IAI46_01195at 267.421 kb on + strandat 267.437 kb on + strandat 267.437 kb on + strandat 267.437 kb on + strandat 267.438 kb on - strandat 267.494 kb on + strandat 267.495 kb on - strandat 267.495 kb on - strandat 267.495 kb on - strandat 267.495 kb on - strandat 267.495 kb on - strandat 267.507 kb on + strandat 267.507 kb on + strandat 267.507 kb on + strandat 267.507 kb on + strandat 267.507 kb on + strandat 267.508 kb on - strandat 267.508 kb on - strandat 267.508 kb on - strandat 267.611 kb on + strandat 267.612 kb on - strandat 267.612 kb on - strandat 267.612 kb on - strandat 267.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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265,614 + -0.0
265,628 + -0.4
265,653 + +0.3
266,627 - +0.0
266,685 - +0.4
266,701 - +0.4
266,701 - +0.4
266,704 - +1.6
266,704 - -0.1
266,704 - +0.4
266,705 + +0.6
266,705 + +0.2
266,705 + -0.4
266,706 - +0.1
266,706 - +0.2
266,764 + -0.1
266,765 - -0.4
266,896 + -0.0
266,897 - +0.3
266,899 + +0.3
266,900 - -0.3
266,900 - -0.1
266,900 - -0.3
266,917 + IAI46_01195 0.13 -0.1
266,917 + IAI46_01195 0.13 +0.6
266,917 + IAI46_01195 0.13 +1.1
266,917 + IAI46_01195 0.13 +0.3
266,918 - IAI46_01195 0.13 +0.6
266,918 - IAI46_01195 0.13 -0.3
266,918 - IAI46_01195 0.13 +0.3
266,918 - IAI46_01195 0.13 -0.8
266,920 + IAI46_01195 0.13 +0.1
266,920 + IAI46_01195 0.13 +0.0
266,920 + IAI46_01195 0.13 +0.5
266,921 - IAI46_01195 0.13 +0.2
266,921 - IAI46_01195 0.13 +0.3
266,921 - IAI46_01195 0.13 +0.8
266,921 - IAI46_01195 0.13 +0.5
266,921 - IAI46_01195 0.13 +1.0
266,941 + IAI46_01195 0.17 -0.9
266,942 - IAI46_01195 0.17 -0.2
266,969 - IAI46_01195 0.22 -0.4
266,984 - IAI46_01195 0.25 +1.7
267,022 + IAI46_01195 0.32 -0.0
267,022 + IAI46_01195 0.32 +0.2
267,023 - IAI46_01195 0.32 +0.5
267,117 + IAI46_01195 0.49 +0.2
267,117 + IAI46_01195 0.49 -0.2
267,118 - IAI46_01195 0.49 -0.0
267,174 + IAI46_01195 0.60 -0.4
267,174 + IAI46_01195 0.60 -0.0
267,175 - IAI46_01195 0.60 +0.2
267,175 - IAI46_01195 0.60 +1.2
267,259 + IAI46_01195 0.75 +0.4
267,259 + IAI46_01195 0.75 -0.7
267,259 + IAI46_01195 0.75 +1.2
267,259 + IAI46_01195 0.75 -0.6
267,259 + IAI46_01195 0.75 +0.5
267,259 + IAI46_01195 0.75 -0.1
267,421 + +0.2
267,437 + +0.8
267,437 + -0.0
267,437 + +0.6
267,438 - +0.0
267,494 + -0.4
267,495 - +1.1
267,495 - -1.9
267,495 - +0.4
267,495 - -0.4
267,495 - +0.3
267,507 + +0.5
267,507 + +0.8
267,507 + -0.2
267,507 + +0.2
267,507 + +0.7
267,508 - +0.4
267,508 - -0.6
267,508 - +0.2
267,611 + +0.8
267,612 - +0.1
267,612 - -0.2
267,612 - -1.7
267,612 - +0.1

Or see this region's nucleotide sequence