Strain Fitness in Serratia liquefaciens MT49 around IAI46_00980

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00970 and IAI46_00975 overlap by 4 nucleotidesIAI46_00975 and IAI46_00980 are separated by 3 nucleotidesIAI46_00980 and IAI46_00985 are separated by 105 nucleotides IAI46_00970: IAI46_00970 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 217,315 to 218,598 _00970 IAI46_00975: IAI46_00975 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 218,595 to 219,362 _00975 IAI46_00980: IAI46_00980 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 219,366 to 220,067 _00980 IAI46_00985: IAI46_00985 - PLP-dependent aminotransferase family protein, at 220,173 to 221,360 _00985 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 218.464 kb on + strand, within IAI46_00970at 218.464 kb on + strand, within IAI46_00970at 218.464 kb on + strand, within IAI46_00970at 218.464 kb on + strand, within IAI46_00970at 218.465 kb on - strand, within IAI46_00970at 218.465 kb on - strand, within IAI46_00970at 218.489 kb on + strandat 218.489 kb on + strandat 218.490 kb on - strandat 218.495 kb on + strandat 218.495 kb on + strandat 218.496 kb on - strandat 218.496 kb on - strandat 218.496 kb on - strandat 218.496 kb on - strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.595 kb on - strandat 218.663 kb on + strandat 218.741 kb on + strand, within IAI46_00975at 218.742 kb on - strand, within IAI46_00975at 218.760 kb on + strand, within IAI46_00975at 218.761 kb on - strand, within IAI46_00975at 218.863 kb on + strand, within IAI46_00975at 218.863 kb on + strand, within IAI46_00975at 218.863 kb on + strand, within IAI46_00975at 218.864 kb on - strand, within IAI46_00975at 218.864 kb on - strand, within IAI46_00975at 219.119 kb on - strand, within IAI46_00975at 219.119 kb on - strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.206 kb on + strand, within IAI46_00975at 219.207 kb on - strand, within IAI46_00975at 219.266 kb on + strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.267 kb on - strand, within IAI46_00975at 219.270 kb on + strand, within IAI46_00975at 219.270 kb on + strand, within IAI46_00975at 219.271 kb on - strand, within IAI46_00975at 219.271 kb on - strand, within IAI46_00975at 219.271 kb on - strand, within IAI46_00975at 219.348 kb on + strandat 219.348 kb on + strandat 219.360 kb on + strandat 219.361 kb on - strandat 219.361 kb on - strandat 219.366 kb on - strandat 219.377 kb on + strandat 219.425 kb on + strandat 219.436 kb on + strandat 219.437 kb on - strand, within IAI46_00980at 219.437 kb on - strand, within IAI46_00980at 219.437 kb on - strand, within IAI46_00980at 219.482 kb on + strand, within IAI46_00980at 219.561 kb on - strand, within IAI46_00980at 219.635 kb on + strand, within IAI46_00980at 219.690 kb on + strand, within IAI46_00980at 219.690 kb on + strand, within IAI46_00980at 219.691 kb on - strand, within IAI46_00980at 219.746 kb on + strand, within IAI46_00980at 219.797 kb on - strand, within IAI46_00980at 219.975 kb on + strand, within IAI46_00980at 219.976 kb on - strand, within IAI46_00980at 219.976 kb on - strand, within IAI46_00980at 219.979 kb on + strand, within IAI46_00980at 219.979 kb on + strand, within IAI46_00980at 219.979 kb on + strand, within IAI46_00980at 219.980 kb on - strand, within IAI46_00980at 220.010 kb on + strandat 220.010 kb on + strandat 220.011 kb on - strandat 220.011 kb on - strandat 220.053 kb on + strandat 220.053 kb on + strandat 220.054 kb on - strandat 220.127 kb on + strandat 220.138 kb on + strandat 220.189 kb on + strandat 220.189 kb on + strandat 220.208 kb on - strandat 220.250 kb on + strandat 220.250 kb on + strandat 220.251 kb on - strandat 220.251 kb on - strandat 220.251 kb on - strandat 220.251 kb on - strandat 220.552 kb on - strand, within IAI46_00985at 220.677 kb on + strand, within IAI46_00985at 220.677 kb on + strand, within IAI46_00985at 220.677 kb on + strand, within IAI46_00985at 220.677 kb on + strand, within IAI46_00985at 220.677 kb on + strand, within IAI46_00985at 220.678 kb on - strand, within IAI46_00985at 220.678 kb on - strand, within IAI46_00985at 220.678 kb on - strand, within IAI46_00985at 220.678 kb on - strand, within IAI46_00985at 220.678 kb on - strand, within IAI46_00985at 220.678 kb on - strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.874 kb on + strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.875 kb on - strand, within IAI46_00985at 220.878 kb on + strand, within IAI46_00985at 220.878 kb on + strand, within IAI46_00985at 220.878 kb on + strand, within IAI46_00985at 220.879 kb on - strand, within IAI46_00985at 220.879 kb on - strand, within IAI46_00985at 220.879 kb on - strand, within IAI46_00985at 220.879 kb on - strand, within IAI46_00985at 220.880 kb on + strand, within IAI46_00985at 220.955 kb on + strand, within IAI46_00985at 220.955 kb on + strand, within IAI46_00985at 221.017 kb on + strand, within IAI46_00985at 221.017 kb on + strand, within IAI46_00985at 221.017 kb on + strand, within IAI46_00985at 221.017 kb on + strand, within IAI46_00985at 221.017 kb on + strand, within IAI46_00985at 221.018 kb on - strand, within IAI46_00985at 221.018 kb on - strand, within IAI46_00985at 221.018 kb on - strand, within IAI46_00985at 221.018 kb on - strand, within IAI46_00985at 221.018 kb on - strand, within IAI46_00985at 221.018 kb on - strand, within IAI46_00985at 221.025 kb on + strand, within IAI46_00985at 221.026 kb on - strand, within IAI46_00985at 221.026 kb on - strand, within IAI46_00985

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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218,464 + IAI46_00970 0.89 +0.1
218,464 + IAI46_00970 0.89 +0.0
218,464 + IAI46_00970 0.89 +0.7
218,464 + IAI46_00970 0.89 -0.2
218,465 - IAI46_00970 0.90 +0.5
218,465 - IAI46_00970 0.90 +0.7
218,489 + -0.2
218,489 + +0.7
218,490 - +0.2
218,495 + +0.3
218,495 + +0.1
218,496 - -0.1
218,496 - +0.2
218,496 - +1.0
218,496 - +0.3
218,594 + +0.4
218,594 + +0.2
218,595 - -0.5
218,595 - -0.2
218,595 - -0.5
218,595 - +0.2
218,595 - -0.6
218,663 + +1.7
218,741 + IAI46_00975 0.19 -0.0
218,742 - IAI46_00975 0.19 +0.7
218,760 + IAI46_00975 0.21 -0.3
218,761 - IAI46_00975 0.22 -0.7
218,863 + IAI46_00975 0.35 +0.1
218,863 + IAI46_00975 0.35 +0.2
218,863 + IAI46_00975 0.35 +0.0
218,864 - IAI46_00975 0.35 -0.3
218,864 - IAI46_00975 0.35 +0.8
219,119 - IAI46_00975 0.68 -1.6
219,119 - IAI46_00975 0.68 -0.2
219,206 + IAI46_00975 0.80 -0.2
219,206 + IAI46_00975 0.80 -0.0
219,206 + IAI46_00975 0.80 +0.1
219,206 + IAI46_00975 0.80 -0.3
219,206 + IAI46_00975 0.80 +0.4
219,206 + IAI46_00975 0.80 +0.1
219,206 + IAI46_00975 0.80 +0.6
219,206 + IAI46_00975 0.80 +0.4
219,206 + IAI46_00975 0.80 +0.0
219,207 - IAI46_00975 0.80 +0.1
219,266 + IAI46_00975 0.87 -0.3
219,267 - IAI46_00975 0.88 +0.2
219,267 - IAI46_00975 0.88 -0.7
219,267 - IAI46_00975 0.88 -0.1
219,267 - IAI46_00975 0.88 +1.7
219,270 + IAI46_00975 0.88 +0.0
219,270 + IAI46_00975 0.88 +0.5
219,271 - IAI46_00975 0.88 +0.1
219,271 - IAI46_00975 0.88 -0.2
219,271 - IAI46_00975 0.88 +0.5
219,348 + -0.0
219,348 + -0.1
219,360 + -0.3
219,361 - +0.4
219,361 - -0.5
219,366 - +0.7
219,377 + -1.0
219,425 + +0.1
219,436 + +0.2
219,437 - IAI46_00980 0.10 +0.8
219,437 - IAI46_00980 0.10 +0.3
219,437 - IAI46_00980 0.10 +0.2
219,482 + IAI46_00980 0.17 +0.3
219,561 - IAI46_00980 0.28 -0.2
219,635 + IAI46_00980 0.38 -0.1
219,690 + IAI46_00980 0.46 -0.1
219,690 + IAI46_00980 0.46 -0.6
219,691 - IAI46_00980 0.46 -0.1
219,746 + IAI46_00980 0.54 -0.7
219,797 - IAI46_00980 0.61 +0.4
219,975 + IAI46_00980 0.87 -1.3
219,976 - IAI46_00980 0.87 -0.5
219,976 - IAI46_00980 0.87 -1.6
219,979 + IAI46_00980 0.87 +1.1
219,979 + IAI46_00980 0.87 -2.2
219,979 + IAI46_00980 0.87 +0.7
219,980 - IAI46_00980 0.87 +0.1
220,010 + +0.0
220,010 + -0.3
220,011 - +0.5
220,011 - +0.5
220,053 + +0.3
220,053 + -0.1
220,054 - -0.6
220,127 + -0.1
220,138 + +0.2
220,189 + +0.3
220,189 + -0.5
220,208 - -0.3
220,250 + -0.3
220,250 + -0.8
220,251 - +0.5
220,251 - +0.1
220,251 - +0.1
220,251 - +0.1
220,552 - IAI46_00985 0.32 +0.0
220,677 + IAI46_00985 0.42 -0.1
220,677 + IAI46_00985 0.42 +0.5
220,677 + IAI46_00985 0.42 +1.6
220,677 + IAI46_00985 0.42 +0.2
220,677 + IAI46_00985 0.42 -1.0
220,678 - IAI46_00985 0.43 +1.9
220,678 - IAI46_00985 0.43 +0.0
220,678 - IAI46_00985 0.43 +0.1
220,678 - IAI46_00985 0.43 +0.8
220,678 - IAI46_00985 0.43 +0.5
220,678 - IAI46_00985 0.43 -0.1
220,874 + IAI46_00985 0.59 +0.2
220,874 + IAI46_00985 0.59 +0.7
220,874 + IAI46_00985 0.59 +0.2
220,874 + IAI46_00985 0.59 +0.0
220,874 + IAI46_00985 0.59 +0.6
220,874 + IAI46_00985 0.59 +1.1
220,874 + IAI46_00985 0.59 -0.5
220,874 + IAI46_00985 0.59 +1.1
220,874 + IAI46_00985 0.59 -0.9
220,874 + IAI46_00985 0.59 -0.7
220,875 - IAI46_00985 0.59 +0.4
220,875 - IAI46_00985 0.59 +0.9
220,875 - IAI46_00985 0.59 +0.5
220,875 - IAI46_00985 0.59 +0.1
220,875 - IAI46_00985 0.59 +0.3
220,875 - IAI46_00985 0.59 -0.8
220,875 - IAI46_00985 0.59 +0.5
220,875 - IAI46_00985 0.59 +0.2
220,878 + IAI46_00985 0.59 +0.0
220,878 + IAI46_00985 0.59 +0.5
220,878 + IAI46_00985 0.59 -0.2
220,879 - IAI46_00985 0.59 +0.4
220,879 - IAI46_00985 0.59 +0.2
220,879 - IAI46_00985 0.59 +0.7
220,879 - IAI46_00985 0.59 -0.2
220,880 + IAI46_00985 0.60 -0.5
220,955 + IAI46_00985 0.66 +1.1
220,955 + IAI46_00985 0.66 +0.2
221,017 + IAI46_00985 0.71 +1.1
221,017 + IAI46_00985 0.71 +0.8
221,017 + IAI46_00985 0.71 +0.4
221,017 + IAI46_00985 0.71 -0.2
221,017 + IAI46_00985 0.71 +0.8
221,018 - IAI46_00985 0.71 -0.3
221,018 - IAI46_00985 0.71 -0.2
221,018 - IAI46_00985 0.71 -0.2
221,018 - IAI46_00985 0.71 +0.2
221,018 - IAI46_00985 0.71 -0.3
221,018 - IAI46_00985 0.71 +0.4
221,025 + IAI46_00985 0.72 +0.0
221,026 - IAI46_00985 0.72 +1.2
221,026 - IAI46_00985 0.72 +0.5

Or see this region's nucleotide sequence