Strain Fitness in Serratia liquefaciens MT49 around IAI46_00575

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00570 and IAI46_00575 are separated by 6 nucleotidesIAI46_00575 and IAI46_00580 are separated by 117 nucleotides IAI46_00570: IAI46_00570 - exopolyphosphatase, at 134,792 to 136,288 _00570 IAI46_00575: IAI46_00575 - ATP-dependent RNA helicase RhlB, at 136,295 to 137,581 _00575 IAI46_00580: IAI46_00580 - thioredoxin TrxA, at 137,699 to 138,025 _00580 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2 3at 135.367 kb on + strand, within IAI46_00570at 135.497 kb on + strand, within IAI46_00570at 135.519 kb on - strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.814 kb on + strand, within IAI46_00570at 135.816 kb on + strand, within IAI46_00570at 135.816 kb on + strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.918 kb on - strand, within IAI46_00570at 135.918 kb on - strand, within IAI46_00570at 135.927 kb on + strand, within IAI46_00570at 135.927 kb on + strand, within IAI46_00570at 135.928 kb on - strand, within IAI46_00570at 136.202 kb on - strandat 136.266 kb on + strandat 136.267 kb on - strandat 136.309 kb on + strandat 136.309 kb on + strandat 136.351 kb on + strandat 136.351 kb on + strandat 136.431 kb on + strand, within IAI46_00575at 136.432 kb on - strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.462 kb on - strand, within IAI46_00575at 136.563 kb on + strand, within IAI46_00575at 136.564 kb on - strand, within IAI46_00575at 136.591 kb on - strand, within IAI46_00575at 136.591 kb on - strand, within IAI46_00575at 136.657 kb on + strand, within IAI46_00575at 136.733 kb on + strand, within IAI46_00575at 136.733 kb on + strand, within IAI46_00575at 136.734 kb on - strand, within IAI46_00575at 136.865 kb on - strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.888 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.930 kb on - strand, within IAI46_00575at 136.968 kb on - strand, within IAI46_00575at 136.974 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.140 kb on - strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.161 kb on + strand, within IAI46_00575at 137.227 kb on - strand, within IAI46_00575at 137.384 kb on - strand, within IAI46_00575at 137.391 kb on - strand, within IAI46_00575at 137.602 kb on - strandat 137.646 kb on + strandat 137.646 kb on + strandat 137.646 kb on + strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.674 kb on + strandat 137.675 kb on - strandat 137.693 kb on + strandat 137.693 kb on + strandat 137.708 kb on - strandat 137.714 kb on - strandat 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.924 kb on - strand, within IAI46_00580at 137.929 kb on + strand, within IAI46_00580at 137.969 kb on + strand, within IAI46_00580at 138.023 kb on + strandat 138.041 kb on + strandat 138.041 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.179 kb on + strandat 138.204 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.367 kb on + strandat 138.474 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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135,367 + IAI46_00570 0.38 +1.2
135,497 + IAI46_00570 0.47 +0.2
135,519 - IAI46_00570 0.49 +1.0
135,763 + IAI46_00570 0.65 -0.0
135,763 + IAI46_00570 0.65 +0.7
135,763 + IAI46_00570 0.65 -1.1
135,814 + IAI46_00570 0.68 +0.2
135,816 + IAI46_00570 0.68 +0.1
135,816 + IAI46_00570 0.68 +0.2
135,817 - IAI46_00570 0.68 -0.0
135,817 - IAI46_00570 0.68 +0.6
135,817 - IAI46_00570 0.68 -0.8
135,817 - IAI46_00570 0.68 +0.8
135,918 - IAI46_00570 0.75 +0.7
135,918 - IAI46_00570 0.75 +1.8
135,927 + IAI46_00570 0.76 +0.9
135,927 + IAI46_00570 0.76 -0.2
135,928 - IAI46_00570 0.76 +1.6
136,202 - -0.2
136,266 + +2.3
136,267 - +0.5
136,309 + -0.2
136,309 + +0.1
136,351 + -0.9
136,351 + -0.5
136,431 + IAI46_00575 0.11 +2.6
136,432 - IAI46_00575 0.11 -0.1
136,461 + IAI46_00575 0.13 +0.4
136,461 + IAI46_00575 0.13 +0.8
136,461 + IAI46_00575 0.13 -0.4
136,461 + IAI46_00575 0.13 +0.0
136,462 - IAI46_00575 0.13 +0.1
136,563 + IAI46_00575 0.21 -1.5
136,564 - IAI46_00575 0.21 -0.0
136,591 - IAI46_00575 0.23 +0.2
136,591 - IAI46_00575 0.23 +0.3
136,657 + IAI46_00575 0.28 -0.3
136,733 + IAI46_00575 0.34 +0.6
136,733 + IAI46_00575 0.34 +0.0
136,734 - IAI46_00575 0.34 -0.8
136,865 - IAI46_00575 0.44 -0.8
136,872 + IAI46_00575 0.45 +0.0
136,872 + IAI46_00575 0.45 +0.6
136,888 + IAI46_00575 0.46 +0.1
136,929 + IAI46_00575 0.49 +0.1
136,929 + IAI46_00575 0.49 +1.3
136,929 + IAI46_00575 0.49 -0.2
136,930 - IAI46_00575 0.49 -0.1
136,968 - IAI46_00575 0.52 +0.4
136,974 + IAI46_00575 0.53 +0.6
137,070 + IAI46_00575 0.60 -0.6
137,070 + IAI46_00575 0.60 +0.2
137,070 + IAI46_00575 0.60 +0.2
137,071 - IAI46_00575 0.60 -0.9
137,071 - IAI46_00575 0.60 +0.2
137,074 + IAI46_00575 0.61 -0.4
137,074 + IAI46_00575 0.61 -0.2
137,074 + IAI46_00575 0.61 +0.2
137,074 + IAI46_00575 0.61 +1.0
137,075 - IAI46_00575 0.61 -0.3
137,075 - IAI46_00575 0.61 -0.5
137,075 - IAI46_00575 0.61 +0.8
137,124 + IAI46_00575 0.64 +0.2
137,124 + IAI46_00575 0.64 +0.9
137,124 + IAI46_00575 0.64 +0.1
137,124 + IAI46_00575 0.64 -0.5
137,125 - IAI46_00575 0.64 +0.0
137,125 - IAI46_00575 0.64 -0.0
137,125 - IAI46_00575 0.64 +0.5
137,125 - IAI46_00575 0.64 -0.2
137,125 - IAI46_00575 0.64 +2.6
137,125 - IAI46_00575 0.64 -0.5
137,140 - IAI46_00575 0.66 -0.3
137,158 + IAI46_00575 0.67 -0.7
137,158 + IAI46_00575 0.67 -0.7
137,161 + IAI46_00575 0.67 +0.3
137,227 - IAI46_00575 0.72 +1.2
137,384 - IAI46_00575 0.85 -0.9
137,391 - IAI46_00575 0.85 +0.4
137,602 - -1.3
137,646 + -0.9
137,646 + +0.2
137,646 + +0.8
137,647 - -0.9
137,647 - -0.0
137,647 - +0.9
137,647 - -0.1
137,674 + +0.6
137,675 - -0.8
137,693 + -0.3
137,693 + +1.8
137,708 - +0.2
137,714 - -0.6
137,905 + IAI46_00580 0.63 -0.8
137,905 + IAI46_00580 0.63 -0.1
137,905 + IAI46_00580 0.63 +1.1
137,905 + IAI46_00580 0.63 -0.4
137,905 + IAI46_00580 0.63 +0.4
137,906 - IAI46_00580 0.63 +0.2
137,906 - IAI46_00580 0.63 +1.0
137,906 - IAI46_00580 0.63 -0.1
137,906 - IAI46_00580 0.63 -0.4
137,906 - IAI46_00580 0.63 +0.3
137,909 + IAI46_00580 0.64 -0.7
137,909 + IAI46_00580 0.64 +0.6
137,909 + IAI46_00580 0.64 -0.8
137,909 + IAI46_00580 0.64 -1.0
137,924 - IAI46_00580 0.69 +0.3
137,929 + IAI46_00580 0.70 +1.1
137,969 + IAI46_00580 0.83 +3.1
138,023 + +0.5
138,041 + +1.1
138,041 + +1.1
138,101 + +0.7
138,101 + +0.1
138,101 + +0.6
138,101 + -0.2
138,101 + -0.8
138,101 + +0.5
138,101 + +0.7
138,102 - +0.6
138,102 - +0.2
138,102 - +0.6
138,102 - +1.1
138,102 - +1.1
138,102 - +0.4
138,102 - +0.7
138,102 - -2.1
138,179 + -0.2
138,204 + +0.1
138,227 + +0.2
138,227 + +0.1
138,227 + +0.3
138,227 + +0.2
138,227 + +0.9
138,367 + +1.3
138,474 + +0.5
138,535 + +0.4
138,535 + +0.6
138,535 + -0.2
138,535 + -0.4
138,535 + -1.0
138,537 + -0.3

Or see this region's nucleotide sequence