Strain Fitness in Serratia liquefaciens MT49 around IAI46_00240

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00230 and IAI46_00235 are separated by 33 nucleotidesIAI46_00235 and IAI46_00240 are separated by 66 nucleotidesIAI46_00240 and IAI46_00245 overlap by 4 nucleotides IAI46_00230: IAI46_00230 - DcrB-related protein, at 52,853 to 53,500 _00230 IAI46_00235: IAI46_00235 - glutathione S-transferase, at 53,534 to 54,139 _00235 IAI46_00240: IAI46_00240 - L-seryl-tRNA(Sec) selenium transferase, at 54,206 to 55,597 _00240 IAI46_00245: IAI46_00245 - selenocysteine-specific translation elongation factor, at 55,594 to 57,441 _00245 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 53.221 kb on + strand, within IAI46_00230at 53.222 kb on - strand, within IAI46_00230at 53.273 kb on + strand, within IAI46_00230at 53.281 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.377 kb on + strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.498 kb on + strandat 53.498 kb on + strandat 53.542 kb on + strandat 53.543 kb on - strandat 53.543 kb on - strandat 53.553 kb on - strandat 53.714 kb on + strand, within IAI46_00235at 53.714 kb on + strand, within IAI46_00235at 53.739 kb on - strand, within IAI46_00235at 53.803 kb on - strand, within IAI46_00235at 54.026 kb on + strand, within IAI46_00235at 54.168 kb on + strandat 54.169 kb on - strandat 54.187 kb on - strandat 54.187 kb on - strandat 54.187 kb on - strandat 54.230 kb on + strandat 54.241 kb on - strandat 54.321 kb on + strandat 54.321 kb on + strandat 54.322 kb on - strandat 54.322 kb on - strandat 54.358 kb on + strand, within IAI46_00240at 54.359 kb on - strand, within IAI46_00240at 54.359 kb on - strand, within IAI46_00240at 54.517 kb on - strand, within IAI46_00240at 54.517 kb on - strand, within IAI46_00240at 54.519 kb on + strand, within IAI46_00240at 54.519 kb on + strand, within IAI46_00240at 54.519 kb on + strand, within IAI46_00240at 54.520 kb on - strand, within IAI46_00240at 54.563 kb on + strand, within IAI46_00240at 54.564 kb on - strand, within IAI46_00240at 54.615 kb on + strand, within IAI46_00240at 54.615 kb on + strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.616 kb on - strand, within IAI46_00240at 54.618 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.883 kb on + strand, within IAI46_00240at 54.884 kb on - strand, within IAI46_00240at 54.884 kb on - strand, within IAI46_00240at 54.894 kb on - strand, within IAI46_00240at 55.013 kb on + strand, within IAI46_00240at 55.014 kb on - strand, within IAI46_00240at 55.014 kb on - strand, within IAI46_00240at 55.064 kb on + strand, within IAI46_00240at 55.218 kb on + strand, within IAI46_00240at 55.219 kb on - strand, within IAI46_00240at 55.266 kb on + strand, within IAI46_00240at 55.266 kb on + strand, within IAI46_00240at 55.273 kb on - strand, within IAI46_00240at 55.424 kb on + strand, within IAI46_00240at 55.425 kb on - strand, within IAI46_00240at 55.425 kb on - strand, within IAI46_00240at 55.522 kb on + strandat 55.599 kb on + strandat 55.599 kb on + strandat 55.600 kb on - strandat 55.600 kb on - strandat 55.600 kb on - strandat 55.605 kb on + strandat 55.706 kb on + strandat 55.706 kb on + strandat 55.706 kb on + strandat 55.706 kb on + strandat 55.706 kb on + strandat 55.707 kb on - strandat 55.707 kb on - strandat 55.707 kb on - strandat 55.707 kb on - strandat 55.707 kb on - strandat 55.707 kb on - strandat 55.717 kb on + strandat 55.723 kb on + strandat 55.758 kb on + strandat 55.758 kb on + strandat 55.794 kb on + strand, within IAI46_00245at 55.794 kb on + strand, within IAI46_00245at 55.795 kb on - strand, within IAI46_00245at 55.795 kb on - strand, within IAI46_00245at 56.301 kb on + strand, within IAI46_00245at 56.301 kb on + strand, within IAI46_00245at 56.301 kb on + strand, within IAI46_00245at 56.301 kb on + strand, within IAI46_00245at 56.302 kb on - strand, within IAI46_00245at 56.302 kb on - strand, within IAI46_00245at 56.302 kb on - strand, within IAI46_00245at 56.313 kb on + strand, within IAI46_00245at 56.317 kb on - strand, within IAI46_00245at 56.317 kb on - strand, within IAI46_00245at 56.408 kb on + strand, within IAI46_00245at 56.408 kb on + strand, within IAI46_00245at 56.409 kb on - strand, within IAI46_00245at 56.409 kb on - strand, within IAI46_00245at 56.412 kb on + strand, within IAI46_00245at 56.413 kb on - strand, within IAI46_00245at 56.413 kb on - strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.450 kb on + strand, within IAI46_00245at 56.451 kb on - strand, within IAI46_00245at 56.451 kb on - strand, within IAI46_00245at 56.469 kb on + strand, within IAI46_00245at 56.469 kb on + strand, within IAI46_00245at 56.469 kb on + strand, within IAI46_00245at 56.469 kb on + strand, within IAI46_00245at 56.470 kb on - strand, within IAI46_00245at 56.470 kb on - strand, within IAI46_00245at 56.473 kb on - strand, within IAI46_00245

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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53,221 + IAI46_00230 0.57 -0.1
53,222 - IAI46_00230 0.57 -0.0
53,273 + IAI46_00230 0.65 -0.4
53,281 + IAI46_00230 0.66 -2.1
53,370 + IAI46_00230 0.80 -0.0
53,370 + IAI46_00230 0.80 -1.0
53,370 + IAI46_00230 0.80 -0.4
53,371 - IAI46_00230 0.80 +0.3
53,371 - IAI46_00230 0.80 -0.2
53,371 - IAI46_00230 0.80 +0.5
53,371 - IAI46_00230 0.80 -0.2
53,371 - IAI46_00230 0.80 +0.1
53,371 - IAI46_00230 0.80 +0.2
53,377 + IAI46_00230 0.81 +0.5
53,378 - IAI46_00230 0.81 +0.1
53,378 - IAI46_00230 0.81 +0.6
53,378 - IAI46_00230 0.81 -0.8
53,378 - IAI46_00230 0.81 +0.9
53,378 - IAI46_00230 0.81 -0.5
53,378 - IAI46_00230 0.81 +1.6
53,498 + +0.6
53,498 + +0.1
53,542 + +0.3
53,543 - -0.4
53,543 - -0.2
53,553 - +0.7
53,714 + IAI46_00235 0.30 +0.0
53,714 + IAI46_00235 0.30 -0.1
53,739 - IAI46_00235 0.34 -0.6
53,803 - IAI46_00235 0.44 -0.1
54,026 + IAI46_00235 0.81 +0.3
54,168 + -1.2
54,169 - -0.7
54,187 - -0.2
54,187 - +0.2
54,187 - +0.5
54,230 + -0.8
54,241 - +0.1
54,321 + +0.2
54,321 + +0.2
54,322 - +1.1
54,322 - +1.5
54,358 + IAI46_00240 0.11 -0.9
54,359 - IAI46_00240 0.11 +0.2
54,359 - IAI46_00240 0.11 +0.3
54,517 - IAI46_00240 0.22 +0.3
54,517 - IAI46_00240 0.22 +2.1
54,519 + IAI46_00240 0.22 -0.1
54,519 + IAI46_00240 0.22 +0.4
54,519 + IAI46_00240 0.22 -0.4
54,520 - IAI46_00240 0.23 +0.8
54,563 + IAI46_00240 0.26 +0.7
54,564 - IAI46_00240 0.26 +0.5
54,615 + IAI46_00240 0.29 -0.0
54,615 + IAI46_00240 0.29 +0.3
54,616 - IAI46_00240 0.29 -0.1
54,616 - IAI46_00240 0.29 +0.3
54,616 - IAI46_00240 0.29 -0.2
54,616 - IAI46_00240 0.29 +0.4
54,616 - IAI46_00240 0.29 -0.6
54,618 + IAI46_00240 0.30 +0.4
54,883 + IAI46_00240 0.49 +0.2
54,883 + IAI46_00240 0.49 +0.2
54,883 + IAI46_00240 0.49 -0.2
54,883 + IAI46_00240 0.49 +0.1
54,884 - IAI46_00240 0.49 -0.3
54,884 - IAI46_00240 0.49 -0.1
54,894 - IAI46_00240 0.49 +0.7
55,013 + IAI46_00240 0.58 +0.3
55,014 - IAI46_00240 0.58 +0.6
55,014 - IAI46_00240 0.58 +0.7
55,064 + IAI46_00240 0.62 +0.2
55,218 + IAI46_00240 0.73 +0.1
55,219 - IAI46_00240 0.73 -0.4
55,266 + IAI46_00240 0.76 +0.7
55,266 + IAI46_00240 0.76 +0.1
55,273 - IAI46_00240 0.77 +0.2
55,424 + IAI46_00240 0.88 +0.8
55,425 - IAI46_00240 0.88 +0.5
55,425 - IAI46_00240 0.88 +0.1
55,522 + +1.0
55,599 + +1.7
55,599 + +0.2
55,600 - +0.1
55,600 - +0.9
55,600 - +0.0
55,605 + +0.0
55,706 + +0.3
55,706 + +0.2
55,706 + +0.8
55,706 + -0.1
55,706 + +0.2
55,707 - +2.2
55,707 - -0.6
55,707 - -0.9
55,707 - -0.4
55,707 - +2.2
55,707 - -1.3
55,717 + +1.2
55,723 + +1.5
55,758 + -0.4
55,758 + -0.4
55,794 + IAI46_00245 0.11 +0.8
55,794 + IAI46_00245 0.11 -0.1
55,795 - IAI46_00245 0.11 -0.6
55,795 - IAI46_00245 0.11 +1.2
56,301 + IAI46_00245 0.38 -0.3
56,301 + IAI46_00245 0.38 +0.0
56,301 + IAI46_00245 0.38 +1.0
56,301 + IAI46_00245 0.38 -0.7
56,302 - IAI46_00245 0.38 -0.5
56,302 - IAI46_00245 0.38 -0.4
56,302 - IAI46_00245 0.38 +0.5
56,313 + IAI46_00245 0.39 -0.3
56,317 - IAI46_00245 0.39 +0.5
56,317 - IAI46_00245 0.39 +0.3
56,408 + IAI46_00245 0.44 +0.1
56,408 + IAI46_00245 0.44 +0.2
56,409 - IAI46_00245 0.44 +0.8
56,409 - IAI46_00245 0.44 -0.3
56,412 + IAI46_00245 0.44 +0.4
56,413 - IAI46_00245 0.44 -1.1
56,413 - IAI46_00245 0.44 +1.1
56,450 + IAI46_00245 0.46 -0.2
56,450 + IAI46_00245 0.46 +0.0
56,450 + IAI46_00245 0.46 +0.7
56,450 + IAI46_00245 0.46 +0.2
56,450 + IAI46_00245 0.46 +0.4
56,450 + IAI46_00245 0.46 -0.3
56,450 + IAI46_00245 0.46 +1.5
56,450 + IAI46_00245 0.46 -0.6
56,451 - IAI46_00245 0.46 +0.3
56,451 - IAI46_00245 0.46 +0.1
56,469 + IAI46_00245 0.47 -0.3
56,469 + IAI46_00245 0.47 +0.4
56,469 + IAI46_00245 0.47 +0.2
56,469 + IAI46_00245 0.47 +0.0
56,470 - IAI46_00245 0.47 -0.1
56,470 - IAI46_00245 0.47 -0.1
56,473 - IAI46_00245 0.48 -0.7

Or see this region's nucleotide sequence