Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2884

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2883 and Echvi_2884 overlap by 10 nucleotidesEchvi_2884 and Echvi_2885 are separated by 2 nucleotides Echvi_2883: Echvi_2883 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 3,453,098 to 3,455,527 _2883 Echvi_2884: Echvi_2884 - cytochrome oxidase maturation protein, cbb3-type, at 3,455,518 to 3,455,697 _2884 Echvi_2885: Echvi_2885 - cytochrome c oxidase, cbb3-type, subunit I/cytochrome c oxidase, cbb3-type, subunit II, at 3,455,700 to 3,457,853 _2885 Position (kb) 3455 3456Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3454.717 kb on - strand, within Echvi_2883at 3454.726 kb on + strand, within Echvi_2883at 3454.726 kb on + strand, within Echvi_2883at 3454.727 kb on - strand, within Echvi_2883at 3454.727 kb on - strand, within Echvi_2883at 3454.750 kb on - strand, within Echvi_2883at 3454.770 kb on - strand, within Echvi_2883at 3454.829 kb on + strand, within Echvi_2883at 3454.830 kb on - strand, within Echvi_2883at 3454.830 kb on - strand, within Echvi_2883at 3454.830 kb on - strand, within Echvi_2883at 3454.830 kb on - strand, within Echvi_2883at 3454.845 kb on + strand, within Echvi_2883at 3454.846 kb on - strand, within Echvi_2883at 3455.124 kb on - strand, within Echvi_2883at 3455.128 kb on + strand, within Echvi_2883at 3455.129 kb on - strand, within Echvi_2883at 3455.237 kb on - strand, within Echvi_2883at 3455.324 kb on - strandat 3455.366 kb on - strandat 3455.366 kb on - strandat 3455.371 kb on - strandat 3455.371 kb on - strandat 3455.392 kb on - strandat 3455.444 kb on - strandat 3455.525 kb on + strandat 3455.526 kb on - strandat 3455.528 kb on + strandat 3455.574 kb on - strand, within Echvi_2884at 3455.616 kb on + strand, within Echvi_2884at 3455.617 kb on - strand, within Echvi_2884at 3455.617 kb on - strand, within Echvi_2884at 3455.620 kb on + strand, within Echvi_2884at 3455.620 kb on + strand, within Echvi_2884at 3455.620 kb on + strand, within Echvi_2884at 3455.621 kb on - strand, within Echvi_2884at 3455.621 kb on - strand, within Echvi_2884at 3455.621 kb on - strand, within Echvi_2884at 3455.640 kb on - strand, within Echvi_2884at 3455.652 kb on + strand, within Echvi_2884at 3455.653 kb on - strand, within Echvi_2884at 3455.695 kb on + strandat 3455.695 kb on + strandat 3455.695 kb on + strandat 3455.696 kb on - strandat 3455.696 kb on - strandat 3455.696 kb on - strandat 3455.696 kb on - strandat 3455.696 kb on - strandat 3455.696 kb on - strandat 3455.730 kb on + strandat 3455.735 kb on + strandat 3455.739 kb on - strandat 3455.739 kb on - strandat 3455.739 kb on - strandat 3455.739 kb on - strandat 3455.751 kb on + strandat 3455.821 kb on + strandat 3455.854 kb on - strandat 3455.858 kb on + strandat 3455.859 kb on - strandat 3455.937 kb on + strand, within Echvi_2885at 3455.937 kb on + strand, within Echvi_2885at 3455.940 kb on + strand, within Echvi_2885at 3456.072 kb on + strand, within Echvi_2885at 3456.137 kb on + strand, within Echvi_2885at 3456.137 kb on + strand, within Echvi_2885at 3456.147 kb on - strand, within Echvi_2885at 3456.177 kb on + strand, within Echvi_2885at 3456.177 kb on + strand, within Echvi_2885at 3456.177 kb on + strand, within Echvi_2885at 3456.177 kb on + strand, within Echvi_2885at 3456.177 kb on + strand, within Echvi_2885at 3456.178 kb on - strand, within Echvi_2885at 3456.178 kb on - strand, within Echvi_2885at 3456.178 kb on - strand, within Echvi_2885at 3456.185 kb on + strand, within Echvi_2885at 3456.186 kb on - strand, within Echvi_2885at 3456.195 kb on + strand, within Echvi_2885at 3456.196 kb on - strand, within Echvi_2885at 3456.237 kb on - strand, within Echvi_2885at 3456.273 kb on + strand, within Echvi_2885at 3456.274 kb on - strand, within Echvi_2885at 3456.274 kb on - strand, within Echvi_2885at 3456.282 kb on + strand, within Echvi_2885at 3456.283 kb on - strand, within Echvi_2885at 3456.283 kb on - strand, within Echvi_2885at 3456.358 kb on - strand, within Echvi_2885at 3456.373 kb on - strand, within Echvi_2885at 3456.375 kb on + strand, within Echvi_2885at 3456.404 kb on + strand, within Echvi_2885at 3456.408 kb on + strand, within Echvi_2885at 3456.409 kb on - strand, within Echvi_2885at 3456.409 kb on - strand, within Echvi_2885at 3456.414 kb on + strand, within Echvi_2885at 3456.416 kb on + strand, within Echvi_2885at 3456.452 kb on + strand, within Echvi_2885at 3456.453 kb on - strand, within Echvi_2885at 3456.456 kb on + strand, within Echvi_2885at 3456.541 kb on + strand, within Echvi_2885at 3456.542 kb on - strand, within Echvi_2885at 3456.542 kb on - strand, within Echvi_2885at 3456.614 kb on - strand, within Echvi_2885at 3456.638 kb on - strand, within Echvi_2885at 3456.638 kb on - strand, within Echvi_2885

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,454,717 - Echvi_2883 0.67 +0.0
3,454,726 + Echvi_2883 0.67 -0.3
3,454,726 + Echvi_2883 0.67 -0.6
3,454,727 - Echvi_2883 0.67 -0.1
3,454,727 - Echvi_2883 0.67 +0.5
3,454,750 - Echvi_2883 0.68 +0.1
3,454,770 - Echvi_2883 0.69 +0.3
3,454,829 + Echvi_2883 0.71 -0.5
3,454,830 - Echvi_2883 0.71 -0.8
3,454,830 - Echvi_2883 0.71 +0.5
3,454,830 - Echvi_2883 0.71 +0.5
3,454,830 - Echvi_2883 0.71 -1.1
3,454,845 + Echvi_2883 0.72 -1.2
3,454,846 - Echvi_2883 0.72 -0.3
3,455,124 - Echvi_2883 0.83 -0.0
3,455,128 + Echvi_2883 0.84 -0.2
3,455,129 - Echvi_2883 0.84 +0.5
3,455,237 - Echvi_2883 0.88 -2.1
3,455,324 - +0.4
3,455,366 - +0.8
3,455,366 - +0.8
3,455,371 - -0.5
3,455,371 - +0.2
3,455,392 - -0.8
3,455,444 - -0.3
3,455,525 + -0.2
3,455,526 - -0.7
3,455,528 + +0.8
3,455,574 - Echvi_2884 0.31 -1.1
3,455,616 + Echvi_2884 0.54 -1.3
3,455,617 - Echvi_2884 0.55 +0.8
3,455,617 - Echvi_2884 0.55 -0.2
3,455,620 + Echvi_2884 0.57 -0.7
3,455,620 + Echvi_2884 0.57 -0.4
3,455,620 + Echvi_2884 0.57 -0.2
3,455,621 - Echvi_2884 0.57 +0.8
3,455,621 - Echvi_2884 0.57 -1.0
3,455,621 - Echvi_2884 0.57 -0.2
3,455,640 - Echvi_2884 0.68 -2.8
3,455,652 + Echvi_2884 0.74 -1.1
3,455,653 - Echvi_2884 0.75 -0.6
3,455,695 + -1.3
3,455,695 + -0.3
3,455,695 + +0.3
3,455,696 - +0.4
3,455,696 - +0.1
3,455,696 - -0.4
3,455,696 - -0.5
3,455,696 - -1.1
3,455,696 - -0.4
3,455,730 + -0.1
3,455,735 + +1.1
3,455,739 - +0.3
3,455,739 - +0.8
3,455,739 - -0.3
3,455,739 - -0.4
3,455,751 + -0.9
3,455,821 + +0.1
3,455,854 - +0.7
3,455,858 + -0.6
3,455,859 - -1.8
3,455,937 + Echvi_2885 0.11 -2.4
3,455,937 + Echvi_2885 0.11 -0.5
3,455,940 + Echvi_2885 0.11 +1.3
3,456,072 + Echvi_2885 0.17 +0.3
3,456,137 + Echvi_2885 0.20 -0.2
3,456,137 + Echvi_2885 0.20 -0.1
3,456,147 - Echvi_2885 0.21 -1.0
3,456,177 + Echvi_2885 0.22 -0.2
3,456,177 + Echvi_2885 0.22 -0.6
3,456,177 + Echvi_2885 0.22 -0.3
3,456,177 + Echvi_2885 0.22 +0.0
3,456,177 + Echvi_2885 0.22 -0.1
3,456,178 - Echvi_2885 0.22 +1.5
3,456,178 - Echvi_2885 0.22 +0.3
3,456,178 - Echvi_2885 0.22 -0.4
3,456,185 + Echvi_2885 0.23 -0.4
3,456,186 - Echvi_2885 0.23 -0.2
3,456,195 + Echvi_2885 0.23 +0.3
3,456,196 - Echvi_2885 0.23 +0.4
3,456,237 - Echvi_2885 0.25 +0.3
3,456,273 + Echvi_2885 0.27 -0.5
3,456,274 - Echvi_2885 0.27 -0.7
3,456,274 - Echvi_2885 0.27 -0.9
3,456,282 + Echvi_2885 0.27 -0.9
3,456,283 - Echvi_2885 0.27 -1.5
3,456,283 - Echvi_2885 0.27 +0.8
3,456,358 - Echvi_2885 0.31 +0.2
3,456,373 - Echvi_2885 0.31 +0.1
3,456,375 + Echvi_2885 0.31 -0.8
3,456,404 + Echvi_2885 0.33 +0.1
3,456,408 + Echvi_2885 0.33 +2.4
3,456,409 - Echvi_2885 0.33 -0.6
3,456,409 - Echvi_2885 0.33 -1.1
3,456,414 + Echvi_2885 0.33 -0.4
3,456,416 + Echvi_2885 0.33 -0.9
3,456,452 + Echvi_2885 0.35 +0.2
3,456,453 - Echvi_2885 0.35 -0.0
3,456,456 + Echvi_2885 0.35 +0.0
3,456,541 + Echvi_2885 0.39 -0.4
3,456,542 - Echvi_2885 0.39 +0.1
3,456,542 - Echvi_2885 0.39 +0.1
3,456,614 - Echvi_2885 0.42 +0.2
3,456,638 - Echvi_2885 0.44 +1.8
3,456,638 - Echvi_2885 0.44 +0.3

Or see this region's nucleotide sequence