Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2604

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2602 and Echvi_2603 are separated by 84 nucleotidesEchvi_2603 and Echvi_2604 are separated by 170 nucleotidesEchvi_2604 and Echvi_2605 overlap by 4 nucleotides Echvi_2602: Echvi_2602 - Glycosyltransferase, at 3,083,989 to 3,085,122 _2602 Echvi_2603: Echvi_2603 - Uncharacterized protein conserved in bacteria, at 3,085,207 to 3,085,575 _2603 Echvi_2604: Echvi_2604 - Glycosyltransferase, at 3,085,746 to 3,086,879 _2604 Echvi_2605: Echvi_2605 - Glycosyltransferase, at 3,086,876 to 3,088,006 _2605 Position (kb) 3085 3086 3087Strain fitness (log2 ratio) -2 -1 0 1at 3084.788 kb on + strand, within Echvi_2602at 3084.788 kb on + strand, within Echvi_2602at 3084.789 kb on - strand, within Echvi_2602at 3084.789 kb on - strand, within Echvi_2602at 3084.789 kb on - strand, within Echvi_2602at 3084.790 kb on + strand, within Echvi_2602at 3084.790 kb on + strand, within Echvi_2602at 3084.790 kb on + strand, within Echvi_2602at 3084.791 kb on - strand, within Echvi_2602at 3084.796 kb on + strand, within Echvi_2602at 3084.824 kb on - strand, within Echvi_2602at 3084.849 kb on - strand, within Echvi_2602at 3084.855 kb on + strand, within Echvi_2602at 3084.856 kb on - strand, within Echvi_2602at 3084.874 kb on - strand, within Echvi_2602at 3084.876 kb on + strand, within Echvi_2602at 3084.876 kb on + strand, within Echvi_2602at 3084.877 kb on - strand, within Echvi_2602at 3084.878 kb on + strand, within Echvi_2602at 3084.879 kb on - strand, within Echvi_2602at 3084.879 kb on - strand, within Echvi_2602at 3084.879 kb on - strand, within Echvi_2602at 3084.879 kb on - strand, within Echvi_2602at 3084.879 kb on - strand, within Echvi_2602at 3084.888 kb on + strand, within Echvi_2602at 3084.980 kb on - strand, within Echvi_2602at 3085.039 kb on - strandat 3085.141 kb on - strandat 3085.141 kb on - strandat 3085.141 kb on - strandat 3085.185 kb on + strandat 3085.194 kb on + strandat 3085.204 kb on + strandat 3085.205 kb on - strandat 3085.205 kb on - strandat 3085.215 kb on + strandat 3085.215 kb on + strandat 3085.216 kb on - strandat 3085.255 kb on - strand, within Echvi_2603at 3085.338 kb on - strand, within Echvi_2603at 3085.353 kb on + strand, within Echvi_2603at 3085.353 kb on + strand, within Echvi_2603at 3085.353 kb on + strand, within Echvi_2603at 3085.354 kb on - strand, within Echvi_2603at 3085.354 kb on - strand, within Echvi_2603at 3085.354 kb on - strand, within Echvi_2603at 3085.356 kb on - strand, within Echvi_2603at 3085.356 kb on - strand, within Echvi_2603at 3085.366 kb on - strand, within Echvi_2603at 3085.378 kb on + strand, within Echvi_2603at 3085.397 kb on + strand, within Echvi_2603at 3085.398 kb on - strand, within Echvi_2603at 3085.493 kb on + strand, within Echvi_2603at 3085.497 kb on + strand, within Echvi_2603at 3085.497 kb on + strand, within Echvi_2603at 3085.558 kb on - strandat 3085.558 kb on - strandat 3085.558 kb on - strandat 3085.558 kb on - strandat 3085.563 kb on + strandat 3085.563 kb on + strandat 3085.563 kb on + strandat 3085.564 kb on - strandat 3085.564 kb on - strandat 3085.564 kb on - strandat 3085.599 kb on + strandat 3085.625 kb on - strandat 3085.625 kb on - strandat 3085.635 kb on - strandat 3085.639 kb on + strandat 3085.654 kb on - strandat 3085.679 kb on + strandat 3085.741 kb on - strandat 3085.754 kb on - strandat 3085.767 kb on - strandat 3085.811 kb on - strandat 3085.811 kb on - strandat 3085.854 kb on + strandat 3085.854 kb on + strandat 3085.855 kb on - strandat 3085.993 kb on + strand, within Echvi_2604at 3086.001 kb on + strand, within Echvi_2604at 3086.002 kb on - strand, within Echvi_2604at 3086.014 kb on + strand, within Echvi_2604at 3086.015 kb on - strand, within Echvi_2604at 3086.015 kb on - strand, within Echvi_2604at 3086.229 kb on + strand, within Echvi_2604at 3086.229 kb on + strand, within Echvi_2604at 3086.247 kb on - strand, within Echvi_2604at 3086.255 kb on - strand, within Echvi_2604at 3086.437 kb on + strand, within Echvi_2604at 3086.438 kb on - strand, within Echvi_2604at 3086.544 kb on + strand, within Echvi_2604at 3086.566 kb on + strand, within Echvi_2604at 3086.566 kb on + strand, within Echvi_2604at 3086.566 kb on + strand, within Echvi_2604at 3086.567 kb on - strand, within Echvi_2604at 3086.567 kb on - strand, within Echvi_2604at 3086.602 kb on + strand, within Echvi_2604at 3086.602 kb on + strand, within Echvi_2604at 3086.603 kb on - strand, within Echvi_2604at 3086.603 kb on - strand, within Echvi_2604at 3086.619 kb on + strand, within Echvi_2604at 3086.639 kb on - strand, within Echvi_2604at 3086.691 kb on + strand, within Echvi_2604at 3086.692 kb on - strand, within Echvi_2604at 3086.768 kb on + strandat 3086.769 kb on - strandat 3086.981 kb on + strandat 3086.982 kb on - strandat 3087.025 kb on - strand, within Echvi_2605at 3087.037 kb on + strand, within Echvi_2605at 3087.062 kb on + strand, within Echvi_2605at 3087.133 kb on + strand, within Echvi_2605at 3087.133 kb on + strand, within Echvi_2605at 3087.133 kb on + strand, within Echvi_2605at 3087.133 kb on + strand, within Echvi_2605at 3087.133 kb on + strand, within Echvi_2605at 3087.134 kb on - strand, within Echvi_2605at 3087.134 kb on - strand, within Echvi_2605at 3087.139 kb on + strand, within Echvi_2605at 3087.140 kb on - strand, within Echvi_2605at 3087.142 kb on + strand, within Echvi_2605at 3087.215 kb on + strand, within Echvi_2605at 3087.215 kb on + strand, within Echvi_2605at 3087.242 kb on + strand, within Echvi_2605at 3087.242 kb on + strand, within Echvi_2605at 3087.333 kb on + strand, within Echvi_2605at 3087.367 kb on + strand, within Echvi_2605at 3087.395 kb on - strand, within Echvi_2605at 3087.698 kb on + strand, within Echvi_2605at 3087.698 kb on + strand, within Echvi_2605at 3087.792 kb on + strand, within Echvi_2605at 3087.792 kb on + strand, within Echvi_2605

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,084,788 + Echvi_2602 0.70 -0.7
3,084,788 + Echvi_2602 0.70 -0.4
3,084,789 - Echvi_2602 0.71 -1.3
3,084,789 - Echvi_2602 0.71 +0.1
3,084,789 - Echvi_2602 0.71 -0.5
3,084,790 + Echvi_2602 0.71 +0.2
3,084,790 + Echvi_2602 0.71 +0.2
3,084,790 + Echvi_2602 0.71 -0.1
3,084,791 - Echvi_2602 0.71 +0.1
3,084,796 + Echvi_2602 0.71 -0.5
3,084,824 - Echvi_2602 0.74 +0.2
3,084,849 - Echvi_2602 0.76 +1.4
3,084,855 + Echvi_2602 0.76 +0.1
3,084,856 - Echvi_2602 0.76 -1.2
3,084,874 - Echvi_2602 0.78 -0.6
3,084,876 + Echvi_2602 0.78 -0.6
3,084,876 + Echvi_2602 0.78 +0.4
3,084,877 - Echvi_2602 0.78 +0.1
3,084,878 + Echvi_2602 0.78 -1.0
3,084,879 - Echvi_2602 0.78 -1.4
3,084,879 - Echvi_2602 0.78 +0.4
3,084,879 - Echvi_2602 0.78 -0.6
3,084,879 - Echvi_2602 0.78 -2.5
3,084,879 - Echvi_2602 0.78 +0.3
3,084,888 + Echvi_2602 0.79 -0.4
3,084,980 - Echvi_2602 0.87 -0.1
3,085,039 - +0.1
3,085,141 - +1.4
3,085,141 - -1.0
3,085,141 - -1.3
3,085,185 + -0.7
3,085,194 + -1.0
3,085,204 + -0.5
3,085,205 - -0.8
3,085,205 - -0.8
3,085,215 + +0.4
3,085,215 + +0.3
3,085,216 - +0.4
3,085,255 - Echvi_2603 0.13 +0.4
3,085,338 - Echvi_2603 0.36 -0.8
3,085,353 + Echvi_2603 0.40 +0.8
3,085,353 + Echvi_2603 0.40 -0.3
3,085,353 + Echvi_2603 0.40 +1.6
3,085,354 - Echvi_2603 0.40 +0.0
3,085,354 - Echvi_2603 0.40 -0.0
3,085,354 - Echvi_2603 0.40 -0.3
3,085,356 - Echvi_2603 0.40 +0.0
3,085,356 - Echvi_2603 0.40 -1.6
3,085,366 - Echvi_2603 0.43 -1.1
3,085,378 + Echvi_2603 0.46 -0.7
3,085,397 + Echvi_2603 0.51 +1.0
3,085,398 - Echvi_2603 0.52 +0.0
3,085,493 + Echvi_2603 0.78 +0.7
3,085,497 + Echvi_2603 0.79 -0.2
3,085,497 + Echvi_2603 0.79 +1.2
3,085,558 - -0.1
3,085,558 - +0.5
3,085,558 - -0.2
3,085,558 - -0.8
3,085,563 + -0.4
3,085,563 + +1.2
3,085,563 + -1.0
3,085,564 - +0.4
3,085,564 - -0.3
3,085,564 - -0.1
3,085,599 + +1.1
3,085,625 - +0.7
3,085,625 - -0.6
3,085,635 - -0.1
3,085,639 + +0.6
3,085,654 - -0.4
3,085,679 + -0.6
3,085,741 - -1.6
3,085,754 - -0.7
3,085,767 - +0.5
3,085,811 - -1.5
3,085,811 - -0.1
3,085,854 + -0.1
3,085,854 + +0.1
3,085,855 - +1.1
3,085,993 + Echvi_2604 0.22 -0.4
3,086,001 + Echvi_2604 0.22 -0.8
3,086,002 - Echvi_2604 0.23 -0.9
3,086,014 + Echvi_2604 0.24 -0.6
3,086,015 - Echvi_2604 0.24 -0.6
3,086,015 - Echvi_2604 0.24 +0.3
3,086,229 + Echvi_2604 0.43 -1.6
3,086,229 + Echvi_2604 0.43 -0.0
3,086,247 - Echvi_2604 0.44 +0.8
3,086,255 - Echvi_2604 0.45 -1.3
3,086,437 + Echvi_2604 0.61 -0.1
3,086,438 - Echvi_2604 0.61 +0.6
3,086,544 + Echvi_2604 0.70 -1.7
3,086,566 + Echvi_2604 0.72 -1.6
3,086,566 + Echvi_2604 0.72 -0.2
3,086,566 + Echvi_2604 0.72 -1.3
3,086,567 - Echvi_2604 0.72 -0.8
3,086,567 - Echvi_2604 0.72 -0.1
3,086,602 + Echvi_2604 0.75 -0.6
3,086,602 + Echvi_2604 0.75 +1.6
3,086,603 - Echvi_2604 0.76 -0.1
3,086,603 - Echvi_2604 0.76 -1.3
3,086,619 + Echvi_2604 0.77 -1.9
3,086,639 - Echvi_2604 0.79 -0.4
3,086,691 + Echvi_2604 0.83 -0.3
3,086,692 - Echvi_2604 0.83 -0.2
3,086,768 + +1.4
3,086,769 - +0.8
3,086,981 + -0.5
3,086,982 - -1.4
3,087,025 - Echvi_2605 0.13 +0.7
3,087,037 + Echvi_2605 0.14 -0.3
3,087,062 + Echvi_2605 0.16 +1.4
3,087,133 + Echvi_2605 0.23 +1.1
3,087,133 + Echvi_2605 0.23 -1.2
3,087,133 + Echvi_2605 0.23 -1.3
3,087,133 + Echvi_2605 0.23 -0.4
3,087,133 + Echvi_2605 0.23 +0.4
3,087,134 - Echvi_2605 0.23 +0.4
3,087,134 - Echvi_2605 0.23 -0.0
3,087,139 + Echvi_2605 0.23 -0.1
3,087,140 - Echvi_2605 0.23 +0.0
3,087,142 + Echvi_2605 0.24 +0.1
3,087,215 + Echvi_2605 0.30 +1.0
3,087,215 + Echvi_2605 0.30 -1.4
3,087,242 + Echvi_2605 0.32 -0.1
3,087,242 + Echvi_2605 0.32 -0.4
3,087,333 + Echvi_2605 0.40 +1.7
3,087,367 + Echvi_2605 0.43 +0.6
3,087,395 - Echvi_2605 0.46 -0.2
3,087,698 + Echvi_2605 0.73 -0.4
3,087,698 + Echvi_2605 0.73 +0.8
3,087,792 + Echvi_2605 0.81 -0.2
3,087,792 + Echvi_2605 0.81 +0.0

Or see this region's nucleotide sequence