Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4494

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4493 and EX28DRAFT_4494 are separated by 115 nucleotidesEX28DRAFT_4494 and EX28DRAFT_4495 are separated by 85 nucleotides EX28DRAFT_4492: EX28DRAFT_4492 - Carboxylate/Amino Acid/Amine Transporter, at 57,918 to 58,817 _4492 EX28DRAFT_4493: EX28DRAFT_4493 - Transcriptional regulator, at 58,705 to 59,658 _4493 EX28DRAFT_4494: EX28DRAFT_4494 - methionine synthase (B12-independent) (EC 2.1.1.14), at 59,774 to 62,035 _4494 EX28DRAFT_4495: EX28DRAFT_4495 - Dienelactone hydrolase and related enzymes, at 62,121 to 62,927 _4495 Position (kb) 59 60 61 62 63Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 58.865 kb on + strand, within EX28DRAFT_4493at 58.866 kb on - strand, within EX28DRAFT_4493at 58.866 kb on - strand, within EX28DRAFT_4493at 59.177 kb on + strand, within EX28DRAFT_4493at 59.358 kb on + strand, within EX28DRAFT_4493at 59.387 kb on - strand, within EX28DRAFT_4493at 59.387 kb on - strand, within EX28DRAFT_4493at 59.387 kb on - strand, within EX28DRAFT_4493at 59.506 kb on - strand, within EX28DRAFT_4493at 59.685 kb on + strandat 59.701 kb on + strandat 59.701 kb on + strandat 59.702 kb on - strandat 59.702 kb on - strandat 59.702 kb on - strandat 59.702 kb on - strandat 59.703 kb on + strandat 59.703 kb on + strandat 59.704 kb on - strandat 59.704 kb on - strandat 59.708 kb on + strandat 59.722 kb on - strandat 59.722 kb on - strandat 59.770 kb on + strandat 59.770 kb on + strandat 59.770 kb on + strandat 59.771 kb on - strandat 59.850 kb on - strandat 60.045 kb on + strand, within EX28DRAFT_4494at 60.045 kb on + strand, within EX28DRAFT_4494at 60.046 kb on - strand, within EX28DRAFT_4494at 60.049 kb on + strand, within EX28DRAFT_4494at 60.050 kb on - strand, within EX28DRAFT_4494at 60.140 kb on + strand, within EX28DRAFT_4494at 60.140 kb on + strand, within EX28DRAFT_4494at 60.141 kb on - strand, within EX28DRAFT_4494at 60.145 kb on + strand, within EX28DRAFT_4494at 60.146 kb on + strand, within EX28DRAFT_4494at 60.146 kb on + strand, within EX28DRAFT_4494at 60.146 kb on + strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.149 kb on - strand, within EX28DRAFT_4494at 60.149 kb on - strand, within EX28DRAFT_4494at 60.149 kb on - strand, within EX28DRAFT_4494at 60.273 kb on - strand, within EX28DRAFT_4494at 60.438 kb on + strand, within EX28DRAFT_4494at 60.439 kb on - strand, within EX28DRAFT_4494at 60.500 kb on + strand, within EX28DRAFT_4494at 60.501 kb on - strand, within EX28DRAFT_4494at 60.501 kb on - strand, within EX28DRAFT_4494at 60.574 kb on - strand, within EX28DRAFT_4494at 60.580 kb on + strand, within EX28DRAFT_4494at 60.840 kb on + strand, within EX28DRAFT_4494at 61.085 kb on - strand, within EX28DRAFT_4494at 61.114 kb on + strand, within EX28DRAFT_4494at 61.115 kb on - strand, within EX28DRAFT_4494at 61.251 kb on - strand, within EX28DRAFT_4494at 61.389 kb on - strand, within EX28DRAFT_4494at 61.704 kb on - strand, within EX28DRAFT_4494at 62.076 kb on + strandat 62.077 kb on - strandat 62.092 kb on - strandat 62.198 kb on - strandat 62.198 kb on - strandat 62.467 kb on + strand, within EX28DRAFT_4495at 62.477 kb on + strand, within EX28DRAFT_4495at 62.477 kb on + strand, within EX28DRAFT_4495at 62.477 kb on + strand, within EX28DRAFT_4495at 62.478 kb on - strand, within EX28DRAFT_4495at 62.659 kb on + strand, within EX28DRAFT_4495at 62.740 kb on - strand, within EX28DRAFT_4495at 62.962 kb on - strandat 62.962 kb on - strandat 62.962 kb on - strandat 62.965 kb on + strandat 62.965 kb on + strandat 62.966 kb on - strandat 62.966 kb on - strandat 62.967 kb on + strandat 63.031 kb on - strandat 63.032 kb on + strandat 63.032 kb on + strandat 63.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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58,865 + EX28DRAFT_4493 0.17 -2.9
58,866 - EX28DRAFT_4493 0.17 -3.6
58,866 - EX28DRAFT_4493 0.17 +0.5
59,177 + EX28DRAFT_4493 0.49 -1.6
59,358 + EX28DRAFT_4493 0.68 -1.4
59,387 - EX28DRAFT_4493 0.71 +0.1
59,387 - EX28DRAFT_4493 0.71 -1.9
59,387 - EX28DRAFT_4493 0.71 -2.4
59,506 - EX28DRAFT_4493 0.84 -0.3
59,685 + -3.8
59,701 + -1.6
59,701 + -3.3
59,702 - -2.2
59,702 - -4.1
59,702 - -0.2
59,702 - -0.5
59,703 + -3.6
59,703 + -0.5
59,704 - -0.8
59,704 - -2.1
59,708 + -3.0
59,722 - -0.4
59,722 - +1.2
59,770 + -0.6
59,770 + -1.0
59,770 + -2.9
59,771 - +0.3
59,850 - -2.0
60,045 + EX28DRAFT_4494 0.12 -0.4
60,045 + EX28DRAFT_4494 0.12 -3.6
60,046 - EX28DRAFT_4494 0.12 -0.7
60,049 + EX28DRAFT_4494 0.12 -1.6
60,050 - EX28DRAFT_4494 0.12 -0.0
60,140 + EX28DRAFT_4494 0.16 -4.0
60,140 + EX28DRAFT_4494 0.16 -0.5
60,141 - EX28DRAFT_4494 0.16 -2.6
60,145 + EX28DRAFT_4494 0.16 -0.8
60,146 + EX28DRAFT_4494 0.16 -0.7
60,146 + EX28DRAFT_4494 0.16 +3.0
60,146 + EX28DRAFT_4494 0.16 -2.0
60,147 - EX28DRAFT_4494 0.16 -1.3
60,147 - EX28DRAFT_4494 0.16 -1.1
60,147 - EX28DRAFT_4494 0.16 +0.8
60,147 - EX28DRAFT_4494 0.16 -0.4
60,147 - EX28DRAFT_4494 0.16 -0.8
60,148 + EX28DRAFT_4494 0.17 -0.5
60,148 + EX28DRAFT_4494 0.17 +0.4
60,148 + EX28DRAFT_4494 0.17 -1.5
60,148 + EX28DRAFT_4494 0.17 -1.6
60,149 - EX28DRAFT_4494 0.17 +0.8
60,149 - EX28DRAFT_4494 0.17 -1.3
60,149 - EX28DRAFT_4494 0.17 -0.7
60,273 - EX28DRAFT_4494 0.22 -0.1
60,438 + EX28DRAFT_4494 0.29 -0.3
60,439 - EX28DRAFT_4494 0.29 -2.3
60,500 + EX28DRAFT_4494 0.32 -0.5
60,501 - EX28DRAFT_4494 0.32 -0.6
60,501 - EX28DRAFT_4494 0.32 -2.9
60,574 - EX28DRAFT_4494 0.35 +0.1
60,580 + EX28DRAFT_4494 0.36 -1.2
60,840 + EX28DRAFT_4494 0.47 +0.2
61,085 - EX28DRAFT_4494 0.58 -1.0
61,114 + EX28DRAFT_4494 0.59 -2.0
61,115 - EX28DRAFT_4494 0.59 -1.8
61,251 - EX28DRAFT_4494 0.65 -0.8
61,389 - EX28DRAFT_4494 0.71 +1.4
61,704 - EX28DRAFT_4494 0.85 -2.2
62,076 + -0.9
62,077 - -0.3
62,092 - +0.2
62,198 - +1.4
62,198 - +0.2
62,467 + EX28DRAFT_4495 0.43 +1.1
62,477 + EX28DRAFT_4495 0.44 +0.4
62,477 + EX28DRAFT_4495 0.44 -0.0
62,477 + EX28DRAFT_4495 0.44 -0.1
62,478 - EX28DRAFT_4495 0.44 +0.0
62,659 + EX28DRAFT_4495 0.67 +0.8
62,740 - EX28DRAFT_4495 0.77 -0.0
62,962 - +0.8
62,962 - -2.0
62,962 - +0.8
62,965 + +1.0
62,965 + +0.1
62,966 - +0.6
62,966 - +0.1
62,967 + +0.0
63,031 - +0.9
63,032 + +0.8
63,032 + -0.2
63,033 - -1.9

Or see this region's nucleotide sequence