Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4480 and EX28DRAFT_4481 overlap by 1 nucleotides EX28DRAFT_4481 and EX28DRAFT_4482 are separated by 107 nucleotides EX28DRAFT_4482 and EX28DRAFT_4483 are separated by 357 nucleotides
EX28DRAFT_4480: EX28DRAFT_4480 - tyrosine recombinase XerC, at 44,953 to 45,855
_4480
EX28DRAFT_4481: EX28DRAFT_4481 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 45,855 to 46,571
_4481
EX28DRAFT_4482: EX28DRAFT_4482 - ATP-dependent DNA helicase UvrD (EC 3.6.1.-), at 46,679 to 48,841
_4482
EX28DRAFT_4483: EX28DRAFT_4483 - magnesium Mg(2+) and cobalt Co(2+) transport protein (corA), at 49,199 to 50,149
_4483
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 45.791 kb on + strand at 45.865 kb on - strand at 46.059 kb on + strand, within EX28DRAFT_4481 at 46.300 kb on - strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.382 kb on + strand, within EX28DRAFT_4481 at 46.567 kb on + strand at 46.567 kb on + strand at 46.568 kb on - strand at 46.569 kb on + strand at 46.569 kb on + strand at 46.569 kb on + strand at 46.570 kb on - strand at 46.570 kb on - strand at 46.583 kb on - strand at 46.588 kb on - strand at 46.661 kb on + strand at 46.662 kb on - strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.665 kb on - strand at 46.665 kb on - strand at 46.665 kb on - strand at 46.708 kb on + strand at 47.112 kb on - strand, within EX28DRAFT_4482 at 48.204 kb on + strand, within EX28DRAFT_4482 at 48.518 kb on + strand, within EX28DRAFT_4482 at 48.601 kb on - strand, within EX28DRAFT_4482 at 48.733 kb on + strand at 48.868 kb on - strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.943 kb on - strand at 48.943 kb on - strand at 48.943 kb on - strand at 48.944 kb on + strand at 49.009 kb on + strand at 49.051 kb on + strand at 49.052 kb on - strand at 49.073 kb on + strand at 49.125 kb on - strand at 49.586 kb on + strand, within EX28DRAFT_4483 at 49.586 kb on + strand, within EX28DRAFT_4483 at 49.652 kb on + strand, within EX28DRAFT_4483 at 49.652 kb on + strand, within EX28DRAFT_4483 at 49.709 kb on + strand, within EX28DRAFT_4483 at 49.710 kb on - strand, within EX28DRAFT_4483
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 45,791 + +0.9 45,865 - -0.0 46,059 + EX28DRAFT_4481 0.28 -0.8 46,300 - EX28DRAFT_4481 0.62 +0.1 46,359 + EX28DRAFT_4481 0.70 -0.5 46,359 + EX28DRAFT_4481 0.70 -0.0 46,359 + EX28DRAFT_4481 0.70 +0.4 46,360 - EX28DRAFT_4481 0.70 +1.1 46,360 - EX28DRAFT_4481 0.70 +0.6 46,360 - EX28DRAFT_4481 0.70 +0.6 46,360 - EX28DRAFT_4481 0.70 -0.7 46,382 + EX28DRAFT_4481 0.74 +1.2 46,567 + +2.1 46,567 + -0.9 46,568 - +0.4 46,569 + -1.1 46,569 + +0.4 46,569 + +3.1 46,570 - -0.3 46,570 - +1.2 46,583 - +1.9 46,588 - +0.8 46,661 + -0.4 46,662 - +0.4 46,664 + -0.5 46,664 + +0.3 46,664 + -0.1 46,664 + +0.9 46,664 + +0.5 46,664 + -2.7 46,665 - -0.2 46,665 - -0.1 46,665 - -1.7 46,708 + -0.4 47,112 - EX28DRAFT_4482 0.20 -1.9 48,204 + EX28DRAFT_4482 0.71 -1.9 48,518 + EX28DRAFT_4482 0.85 -1.3 48,601 - EX28DRAFT_4482 0.89 -1.1 48,733 + +0.4 48,868 - -0.6 48,902 + +0.2 48,902 + -0.6 48,902 + -0.4 48,943 - -0.5 48,943 - +0.8 48,943 - +0.4 48,944 + +0.3 49,009 + -1.2 49,051 + -2.2 49,052 - -3.2 49,073 + -1.3 49,125 - +2.1 49,586 + EX28DRAFT_4483 0.41 +0.0 49,586 + EX28DRAFT_4483 0.41 +0.5 49,652 + EX28DRAFT_4483 0.48 -2.9 49,652 + EX28DRAFT_4483 0.48 -0.7 49,709 + EX28DRAFT_4483 0.54 +0.9 49,710 - EX28DRAFT_4483 0.54 +0.9
Or see this region's nucleotide sequence