Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4412

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4411 and EX28DRAFT_4412 are separated by 2 nucleotidesEX28DRAFT_4412 and EX28DRAFT_4413 are separated by 226 nucleotides EX28DRAFT_4411: EX28DRAFT_4411 - cystathionine gamma-synthase (EC 2.5.1.48), at 73,485 to 74,820 _4411 EX28DRAFT_4412: EX28DRAFT_4412 - aspartate kinase (EC 2.7.2.4), at 74,823 to 77,255 _4412 EX28DRAFT_4413: EX28DRAFT_4413 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 77,482 to 78,369 _4413 Position (kb) 74 75 76 77 78Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 73.871 kb on + strand, within EX28DRAFT_4411at 73.872 kb on - strand, within EX28DRAFT_4411at 73.872 kb on - strand, within EX28DRAFT_4411at 73.960 kb on + strand, within EX28DRAFT_4411at 73.972 kb on + strand, within EX28DRAFT_4411at 74.166 kb on - strand, within EX28DRAFT_4411at 74.166 kb on - strand, within EX28DRAFT_4411at 74.172 kb on - strand, within EX28DRAFT_4411at 74.181 kb on + strand, within EX28DRAFT_4411at 74.181 kb on + strand, within EX28DRAFT_4411at 74.181 kb on + strand, within EX28DRAFT_4411at 74.182 kb on - strand, within EX28DRAFT_4411at 74.182 kb on - strand, within EX28DRAFT_4411at 74.249 kb on + strand, within EX28DRAFT_4411at 74.250 kb on + strand, within EX28DRAFT_4411at 74.250 kb on + strand, within EX28DRAFT_4411at 74.250 kb on + strand, within EX28DRAFT_4411at 74.251 kb on - strand, within EX28DRAFT_4411at 74.254 kb on + strand, within EX28DRAFT_4411at 74.341 kb on - strand, within EX28DRAFT_4411at 74.374 kb on + strand, within EX28DRAFT_4411at 74.374 kb on + strand, within EX28DRAFT_4411at 74.375 kb on - strand, within EX28DRAFT_4411at 74.375 kb on - strand, within EX28DRAFT_4411at 74.486 kb on - strand, within EX28DRAFT_4411at 74.558 kb on + strand, within EX28DRAFT_4411at 74.558 kb on + strand, within EX28DRAFT_4411at 74.623 kb on - strand, within EX28DRAFT_4411at 74.640 kb on - strand, within EX28DRAFT_4411at 74.692 kb on - strandat 74.743 kb on - strandat 74.775 kb on - strandat 74.882 kb on + strandat 75.187 kb on - strand, within EX28DRAFT_4412at 75.187 kb on - strand, within EX28DRAFT_4412at 75.383 kb on + strand, within EX28DRAFT_4412at 75.383 kb on + strand, within EX28DRAFT_4412at 75.401 kb on + strand, within EX28DRAFT_4412at 75.824 kb on + strand, within EX28DRAFT_4412at 75.825 kb on - strand, within EX28DRAFT_4412at 75.831 kb on - strand, within EX28DRAFT_4412at 75.913 kb on - strand, within EX28DRAFT_4412at 76.299 kb on - strand, within EX28DRAFT_4412at 76.494 kb on + strand, within EX28DRAFT_4412at 76.559 kb on + strand, within EX28DRAFT_4412at 76.565 kb on + strand, within EX28DRAFT_4412at 76.569 kb on + strand, within EX28DRAFT_4412at 76.618 kb on - strand, within EX28DRAFT_4412at 76.618 kb on - strand, within EX28DRAFT_4412at 76.798 kb on + strand, within EX28DRAFT_4412at 76.840 kb on + strand, within EX28DRAFT_4412at 76.840 kb on + strand, within EX28DRAFT_4412at 76.841 kb on - strand, within EX28DRAFT_4412at 76.847 kb on + strand, within EX28DRAFT_4412at 76.991 kb on - strand, within EX28DRAFT_4412at 76.991 kb on - strand, within EX28DRAFT_4412at 77.034 kb on + strandat 77.338 kb on + strandat 77.338 kb on + strandat 77.338 kb on + strandat 77.372 kb on + strandat 77.372 kb on + strandat 77.372 kb on + strandat 77.373 kb on - strandat 77.376 kb on + strandat 77.376 kb on + strandat 77.376 kb on + strandat 77.377 kb on - strandat 77.476 kb on + strandat 77.476 kb on + strandat 77.477 kb on - strandat 77.477 kb on - strandat 77.481 kb on + strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.625 kb on + strand, within EX28DRAFT_4413at 77.660 kb on - strand, within EX28DRAFT_4413at 77.721 kb on + strand, within EX28DRAFT_4413at 77.798 kb on - strand, within EX28DRAFT_4413at 77.821 kb on - strand, within EX28DRAFT_4413at 77.821 kb on - strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 78.052 kb on + strand, within EX28DRAFT_4413at 78.053 kb on - strand, within EX28DRAFT_4413at 78.053 kb on - strand, within EX28DRAFT_4413at 78.126 kb on + strand, within EX28DRAFT_4413at 78.127 kb on - strand, within EX28DRAFT_4413at 78.156 kb on + strand, within EX28DRAFT_4413at 78.247 kb on - strand, within EX28DRAFT_4413

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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73,871 + EX28DRAFT_4411 0.29 -4.8
73,872 - EX28DRAFT_4411 0.29 -4.2
73,872 - EX28DRAFT_4411 0.29 -5.4
73,960 + EX28DRAFT_4411 0.36 -2.7
73,972 + EX28DRAFT_4411 0.36 -2.9
74,166 - EX28DRAFT_4411 0.51 -2.6
74,166 - EX28DRAFT_4411 0.51 -3.0
74,172 - EX28DRAFT_4411 0.51 -0.5
74,181 + EX28DRAFT_4411 0.52 -1.5
74,181 + EX28DRAFT_4411 0.52 -2.9
74,181 + EX28DRAFT_4411 0.52 -4.3
74,182 - EX28DRAFT_4411 0.52 -5.6
74,182 - EX28DRAFT_4411 0.52 -4.3
74,249 + EX28DRAFT_4411 0.57 -3.0
74,250 + EX28DRAFT_4411 0.57 -4.4
74,250 + EX28DRAFT_4411 0.57 -3.7
74,250 + EX28DRAFT_4411 0.57 -1.6
74,251 - EX28DRAFT_4411 0.57 -2.1
74,254 + EX28DRAFT_4411 0.58 +1.1
74,341 - EX28DRAFT_4411 0.64 +0.2
74,374 + EX28DRAFT_4411 0.67 -2.7
74,374 + EX28DRAFT_4411 0.67 -4.3
74,375 - EX28DRAFT_4411 0.67 -1.0
74,375 - EX28DRAFT_4411 0.67 -3.1
74,486 - EX28DRAFT_4411 0.75 -3.9
74,558 + EX28DRAFT_4411 0.80 -2.0
74,558 + EX28DRAFT_4411 0.80 -5.9
74,623 - EX28DRAFT_4411 0.85 -2.6
74,640 - EX28DRAFT_4411 0.86 -1.4
74,692 - -3.0
74,743 - -1.1
74,775 - -2.1
74,882 + +1.2
75,187 - EX28DRAFT_4412 0.15 +2.4
75,187 - EX28DRAFT_4412 0.15 +1.6
75,383 + EX28DRAFT_4412 0.23 +0.2
75,383 + EX28DRAFT_4412 0.23 +0.1
75,401 + EX28DRAFT_4412 0.24 +0.4
75,824 + EX28DRAFT_4412 0.41 +2.4
75,825 - EX28DRAFT_4412 0.41 -0.9
75,831 - EX28DRAFT_4412 0.41 +1.2
75,913 - EX28DRAFT_4412 0.45 -1.7
76,299 - EX28DRAFT_4412 0.61 +0.3
76,494 + EX28DRAFT_4412 0.69 +0.2
76,559 + EX28DRAFT_4412 0.71 +0.9
76,565 + EX28DRAFT_4412 0.72 +0.6
76,569 + EX28DRAFT_4412 0.72 -0.4
76,618 - EX28DRAFT_4412 0.74 +0.2
76,618 - EX28DRAFT_4412 0.74 -0.4
76,798 + EX28DRAFT_4412 0.81 +0.3
76,840 + EX28DRAFT_4412 0.83 +0.4
76,840 + EX28DRAFT_4412 0.83 +0.4
76,841 - EX28DRAFT_4412 0.83 +0.4
76,847 + EX28DRAFT_4412 0.83 +0.6
76,991 - EX28DRAFT_4412 0.89 +0.9
76,991 - EX28DRAFT_4412 0.89 +0.3
77,034 + +0.3
77,338 + +0.0
77,338 + +0.2
77,338 + -0.1
77,372 + +0.6
77,372 + -1.2
77,372 + -0.5
77,373 - +0.7
77,376 + +2.0
77,376 + +0.5
77,376 + -2.2
77,377 - -1.2
77,476 + -1.5
77,476 + -0.8
77,477 - -2.4
77,477 - +1.5
77,481 + -1.2
77,482 - -1.0
77,482 - -0.4
77,482 - -1.5
77,482 - -2.2
77,625 + EX28DRAFT_4413 0.16 -1.9
77,660 - EX28DRAFT_4413 0.20 -1.1
77,721 + EX28DRAFT_4413 0.27 -0.5
77,798 - EX28DRAFT_4413 0.36 +0.0
77,821 - EX28DRAFT_4413 0.38 -2.0
77,821 - EX28DRAFT_4413 0.38 -0.5
77,872 + EX28DRAFT_4413 0.44 -1.7
77,872 + EX28DRAFT_4413 0.44 +0.0
77,872 + EX28DRAFT_4413 0.44 -1.6
77,872 + EX28DRAFT_4413 0.44 -1.7
77,872 + EX28DRAFT_4413 0.44 -3.9
77,872 + EX28DRAFT_4413 0.44 -2.2
77,873 - EX28DRAFT_4413 0.44 -3.5
77,873 - EX28DRAFT_4413 0.44 -1.2
77,873 - EX28DRAFT_4413 0.44 -2.4
77,873 - EX28DRAFT_4413 0.44 -0.6
77,873 - EX28DRAFT_4413 0.44 -2.5
77,873 - EX28DRAFT_4413 0.44 -1.0
77,873 - EX28DRAFT_4413 0.44 -1.1
78,052 + EX28DRAFT_4413 0.64 -3.5
78,053 - EX28DRAFT_4413 0.64 -1.1
78,053 - EX28DRAFT_4413 0.64 -2.0
78,126 + EX28DRAFT_4413 0.73 -1.6
78,127 - EX28DRAFT_4413 0.73 -1.9
78,156 + EX28DRAFT_4413 0.76 -3.2
78,247 - EX28DRAFT_4413 0.86 -1.9

Or see this region's nucleotide sequence