Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4357

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4356 and EX28DRAFT_4357 are separated by 45 nucleotidesEX28DRAFT_4357 and EX28DRAFT_4358 are separated by 16 nucleotides EX28DRAFT_4356: EX28DRAFT_4356 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 20,117 to 21,499 _4356 EX28DRAFT_4357: EX28DRAFT_4357 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 21,545 to 23,569 _4357 EX28DRAFT_4358: EX28DRAFT_4358 - N-acyl-D-glucosamine 2-epimerase, at 23,586 to 24,827 _4358 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 20.574 kb on + strand, within EX28DRAFT_4356at 20.575 kb on - strand, within EX28DRAFT_4356at 20.661 kb on + strand, within EX28DRAFT_4356at 20.661 kb on + strand, within EX28DRAFT_4356at 20.662 kb on - strand, within EX28DRAFT_4356at 20.662 kb on - strand, within EX28DRAFT_4356at 20.662 kb on - strand, within EX28DRAFT_4356at 20.691 kb on + strand, within EX28DRAFT_4356at 20.692 kb on - strand, within EX28DRAFT_4356at 20.700 kb on + strand, within EX28DRAFT_4356at 20.703 kb on + strand, within EX28DRAFT_4356at 20.768 kb on - strand, within EX28DRAFT_4356at 20.853 kb on + strand, within EX28DRAFT_4356at 20.875 kb on - strand, within EX28DRAFT_4356at 20.887 kb on + strand, within EX28DRAFT_4356at 20.887 kb on + strand, within EX28DRAFT_4356at 20.888 kb on - strand, within EX28DRAFT_4356at 20.888 kb on - strand, within EX28DRAFT_4356at 20.932 kb on - strand, within EX28DRAFT_4356at 20.932 kb on - strand, within EX28DRAFT_4356at 20.987 kb on - strand, within EX28DRAFT_4356at 21.118 kb on - strand, within EX28DRAFT_4356at 21.220 kb on - strand, within EX28DRAFT_4356at 21.342 kb on + strand, within EX28DRAFT_4356at 21.373 kb on - strandat 21.416 kb on - strandat 21.455 kb on - strandat 21.467 kb on + strandat 21.468 kb on - strandat 21.487 kb on + strandat 21.488 kb on - strandat 21.488 kb on - strandat 21.488 kb on - strandat 21.500 kb on + strandat 21.501 kb on - strandat 21.503 kb on + strandat 21.504 kb on - strandat 21.504 kb on - strandat 21.550 kb on + strandat 21.551 kb on - strandat 21.557 kb on + strandat 21.557 kb on + strandat 21.558 kb on - strandat 21.558 kb on - strandat 21.558 kb on - strandat 21.696 kb on + strandat 21.762 kb on + strand, within EX28DRAFT_4357at 21.769 kb on - strand, within EX28DRAFT_4357at 21.802 kb on - strand, within EX28DRAFT_4357at 21.870 kb on + strand, within EX28DRAFT_4357at 21.871 kb on - strand, within EX28DRAFT_4357at 22.057 kb on + strand, within EX28DRAFT_4357at 22.274 kb on - strand, within EX28DRAFT_4357at 22.274 kb on - strand, within EX28DRAFT_4357at 22.357 kb on - strand, within EX28DRAFT_4357at 22.470 kb on + strand, within EX28DRAFT_4357at 22.572 kb on + strand, within EX28DRAFT_4357at 22.583 kb on - strand, within EX28DRAFT_4357at 22.584 kb on + strand, within EX28DRAFT_4357at 22.585 kb on - strand, within EX28DRAFT_4357at 22.585 kb on - strand, within EX28DRAFT_4357at 22.585 kb on - strand, within EX28DRAFT_4357at 22.592 kb on + strand, within EX28DRAFT_4357at 22.644 kb on + strand, within EX28DRAFT_4357at 22.700 kb on - strand, within EX28DRAFT_4357at 22.800 kb on - strand, within EX28DRAFT_4357at 22.922 kb on - strand, within EX28DRAFT_4357at 22.922 kb on - strand, within EX28DRAFT_4357at 22.977 kb on + strand, within EX28DRAFT_4357at 22.978 kb on - strand, within EX28DRAFT_4357at 22.978 kb on - strand, within EX28DRAFT_4357at 23.005 kb on - strand, within EX28DRAFT_4357at 23.049 kb on + strand, within EX28DRAFT_4357at 23.050 kb on - strand, within EX28DRAFT_4357at 23.053 kb on - strand, within EX28DRAFT_4357at 23.094 kb on - strand, within EX28DRAFT_4357at 23.097 kb on + strand, within EX28DRAFT_4357at 23.097 kb on + strand, within EX28DRAFT_4357at 23.098 kb on - strand, within EX28DRAFT_4357at 23.098 kb on - strand, within EX28DRAFT_4357at 23.193 kb on + strand, within EX28DRAFT_4357at 23.194 kb on - strand, within EX28DRAFT_4357at 23.197 kb on + strand, within EX28DRAFT_4357at 23.198 kb on - strand, within EX28DRAFT_4357at 23.198 kb on - strand, within EX28DRAFT_4357at 23.261 kb on - strand, within EX28DRAFT_4357at 23.411 kb on - strandat 23.516 kb on - strandat 23.549 kb on + strandat 23.549 kb on + strandat 23.550 kb on - strandat 23.550 kb on - strandat 23.550 kb on - strandat 23.550 kb on - strandat 23.550 kb on - strandat 23.552 kb on - strandat 23.552 kb on - strandat 23.552 kb on - strandat 23.564 kb on - strandat 23.632 kb on - strandat 23.683 kb on + strandat 23.683 kb on + strandat 23.718 kb on + strand, within EX28DRAFT_4358at 23.719 kb on - strand, within EX28DRAFT_4358at 23.719 kb on - strand, within EX28DRAFT_4358at 23.776 kb on + strand, within EX28DRAFT_4358at 23.851 kb on + strand, within EX28DRAFT_4358at 23.898 kb on + strand, within EX28DRAFT_4358at 23.898 kb on + strand, within EX28DRAFT_4358at 23.899 kb on - strand, within EX28DRAFT_4358at 23.899 kb on - strand, within EX28DRAFT_4358at 24.139 kb on + strand, within EX28DRAFT_4358at 24.274 kb on + strand, within EX28DRAFT_4358at 24.274 kb on + strand, within EX28DRAFT_4358at 24.275 kb on - strand, within EX28DRAFT_4358at 24.275 kb on - strand, within EX28DRAFT_4358at 24.275 kb on - strand, within EX28DRAFT_4358at 24.545 kb on - strand, within EX28DRAFT_4358

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
20,574 + EX28DRAFT_4356 0.33 +0.5
20,575 - EX28DRAFT_4356 0.33 -0.5
20,661 + EX28DRAFT_4356 0.39 +1.4
20,661 + EX28DRAFT_4356 0.39 +0.6
20,662 - EX28DRAFT_4356 0.39 +0.3
20,662 - EX28DRAFT_4356 0.39 -0.1
20,662 - EX28DRAFT_4356 0.39 -0.4
20,691 + EX28DRAFT_4356 0.42 +0.5
20,692 - EX28DRAFT_4356 0.42 +1.9
20,700 + EX28DRAFT_4356 0.42 +0.8
20,703 + EX28DRAFT_4356 0.42 -0.7
20,768 - EX28DRAFT_4356 0.47 +0.8
20,853 + EX28DRAFT_4356 0.53 -0.0
20,875 - EX28DRAFT_4356 0.55 -0.6
20,887 + EX28DRAFT_4356 0.56 +0.3
20,887 + EX28DRAFT_4356 0.56 -0.1
20,888 - EX28DRAFT_4356 0.56 +0.9
20,888 - EX28DRAFT_4356 0.56 +0.0
20,932 - EX28DRAFT_4356 0.59 +3.0
20,932 - EX28DRAFT_4356 0.59 -0.4
20,987 - EX28DRAFT_4356 0.63 -0.6
21,118 - EX28DRAFT_4356 0.72 +0.4
21,220 - EX28DRAFT_4356 0.80 +0.3
21,342 + EX28DRAFT_4356 0.89 -0.0
21,373 - +0.1
21,416 - +0.3
21,455 - -2.0
21,467 + +0.3
21,468 - -3.2
21,487 + +0.2
21,488 - +0.0
21,488 - -0.6
21,488 - -0.5
21,500 + -0.8
21,501 - +0.3
21,503 + -0.5
21,504 - -0.2
21,504 - -4.6
21,550 + -1.0
21,551 - +1.3
21,557 + +0.4
21,557 + +0.6
21,558 - +0.5
21,558 - +0.3
21,558 - -2.0
21,696 + -0.3
21,762 + EX28DRAFT_4357 0.11 +0.8
21,769 - EX28DRAFT_4357 0.11 -1.3
21,802 - EX28DRAFT_4357 0.13 +0.3
21,870 + EX28DRAFT_4357 0.16 +1.0
21,871 - EX28DRAFT_4357 0.16 +0.7
22,057 + EX28DRAFT_4357 0.25 -0.3
22,274 - EX28DRAFT_4357 0.36 +0.4
22,274 - EX28DRAFT_4357 0.36 +0.9
22,357 - EX28DRAFT_4357 0.40 +0.9
22,470 + EX28DRAFT_4357 0.46 +0.1
22,572 + EX28DRAFT_4357 0.51 +0.3
22,583 - EX28DRAFT_4357 0.51 -0.2
22,584 + EX28DRAFT_4357 0.51 +0.5
22,585 - EX28DRAFT_4357 0.51 +0.2
22,585 - EX28DRAFT_4357 0.51 +1.3
22,585 - EX28DRAFT_4357 0.51 +1.2
22,592 + EX28DRAFT_4357 0.52 +0.2
22,644 + EX28DRAFT_4357 0.54 +0.1
22,700 - EX28DRAFT_4357 0.57 -0.2
22,800 - EX28DRAFT_4357 0.62 +0.5
22,922 - EX28DRAFT_4357 0.68 +0.4
22,922 - EX28DRAFT_4357 0.68 -0.1
22,977 + EX28DRAFT_4357 0.71 -1.8
22,978 - EX28DRAFT_4357 0.71 -1.5
22,978 - EX28DRAFT_4357 0.71 +0.4
23,005 - EX28DRAFT_4357 0.72 -4.3
23,049 + EX28DRAFT_4357 0.74 +0.1
23,050 - EX28DRAFT_4357 0.74 -0.1
23,053 - EX28DRAFT_4357 0.74 +0.6
23,094 - EX28DRAFT_4357 0.76 +1.7
23,097 + EX28DRAFT_4357 0.77 -3.5
23,097 + EX28DRAFT_4357 0.77 -0.2
23,098 - EX28DRAFT_4357 0.77 +0.6
23,098 - EX28DRAFT_4357 0.77 +1.0
23,193 + EX28DRAFT_4357 0.81 -1.6
23,194 - EX28DRAFT_4357 0.81 -3.9
23,197 + EX28DRAFT_4357 0.82 +0.6
23,198 - EX28DRAFT_4357 0.82 -0.0
23,198 - EX28DRAFT_4357 0.82 +0.5
23,261 - EX28DRAFT_4357 0.85 -2.1
23,411 - +0.7
23,516 - +0.1
23,549 + +2.1
23,549 + -0.4
23,550 - +0.1
23,550 - +0.2
23,550 - -0.6
23,550 - +0.9
23,550 - -0.6
23,552 - +0.2
23,552 - +0.2
23,552 - +0.6
23,564 - +1.4
23,632 - -4.7
23,683 + +0.4
23,683 + -1.6
23,718 + EX28DRAFT_4358 0.11 -1.2
23,719 - EX28DRAFT_4358 0.11 +1.8
23,719 - EX28DRAFT_4358 0.11 +0.2
23,776 + EX28DRAFT_4358 0.15 -1.2
23,851 + EX28DRAFT_4358 0.21 +0.8
23,898 + EX28DRAFT_4358 0.25 +0.2
23,898 + EX28DRAFT_4358 0.25 +0.9
23,899 - EX28DRAFT_4358 0.25 +0.5
23,899 - EX28DRAFT_4358 0.25 -0.2
24,139 + EX28DRAFT_4358 0.45 -0.4
24,274 + EX28DRAFT_4358 0.55 +0.1
24,274 + EX28DRAFT_4358 0.55 +0.8
24,275 - EX28DRAFT_4358 0.55 -0.1
24,275 - EX28DRAFT_4358 0.55 +0.1
24,275 - EX28DRAFT_4358 0.55 +0.5
24,545 - EX28DRAFT_4358 0.77 +1.7

Or see this region's nucleotide sequence