Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4356 and EX28DRAFT_4357 are separated by 45 nucleotides EX28DRAFT_4357 and EX28DRAFT_4358 are separated by 16 nucleotides
EX28DRAFT_4356: EX28DRAFT_4356 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 20,117 to 21,499
_4356
EX28DRAFT_4357: EX28DRAFT_4357 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 21,545 to 23,569
_4357
EX28DRAFT_4358: EX28DRAFT_4358 - N-acyl-D-glucosamine 2-epimerase, at 23,586 to 24,827
_4358
Position (kb)
21
22
23
24 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 20.574 kb on + strand, within EX28DRAFT_4356 at 20.575 kb on - strand, within EX28DRAFT_4356 at 20.661 kb on + strand, within EX28DRAFT_4356 at 20.661 kb on + strand, within EX28DRAFT_4356 at 20.662 kb on - strand, within EX28DRAFT_4356 at 20.662 kb on - strand, within EX28DRAFT_4356 at 20.662 kb on - strand, within EX28DRAFT_4356 at 20.691 kb on + strand, within EX28DRAFT_4356 at 20.692 kb on - strand, within EX28DRAFT_4356 at 20.700 kb on + strand, within EX28DRAFT_4356 at 20.703 kb on + strand, within EX28DRAFT_4356 at 20.768 kb on - strand, within EX28DRAFT_4356 at 20.853 kb on + strand, within EX28DRAFT_4356 at 20.875 kb on - strand, within EX28DRAFT_4356 at 20.887 kb on + strand, within EX28DRAFT_4356 at 20.887 kb on + strand, within EX28DRAFT_4356 at 20.888 kb on - strand, within EX28DRAFT_4356 at 20.888 kb on - strand, within EX28DRAFT_4356 at 20.932 kb on - strand, within EX28DRAFT_4356 at 20.932 kb on - strand, within EX28DRAFT_4356 at 20.987 kb on - strand, within EX28DRAFT_4356 at 21.118 kb on - strand, within EX28DRAFT_4356 at 21.220 kb on - strand, within EX28DRAFT_4356 at 21.342 kb on + strand, within EX28DRAFT_4356 at 21.373 kb on - strand at 21.416 kb on - strand at 21.455 kb on - strand at 21.467 kb on + strand at 21.468 kb on - strand at 21.487 kb on + strand at 21.488 kb on - strand at 21.488 kb on - strand at 21.488 kb on - strand at 21.500 kb on + strand at 21.501 kb on - strand at 21.503 kb on + strand at 21.504 kb on - strand at 21.504 kb on - strand at 21.550 kb on + strand at 21.551 kb on - strand at 21.557 kb on + strand at 21.557 kb on + strand at 21.558 kb on - strand at 21.558 kb on - strand at 21.558 kb on - strand at 21.696 kb on + strand at 21.762 kb on + strand, within EX28DRAFT_4357 at 21.769 kb on - strand, within EX28DRAFT_4357 at 21.802 kb on - strand, within EX28DRAFT_4357 at 21.870 kb on + strand, within EX28DRAFT_4357 at 21.871 kb on - strand, within EX28DRAFT_4357 at 22.057 kb on + strand, within EX28DRAFT_4357 at 22.274 kb on - strand, within EX28DRAFT_4357 at 22.274 kb on - strand, within EX28DRAFT_4357 at 22.357 kb on - strand, within EX28DRAFT_4357 at 22.470 kb on + strand, within EX28DRAFT_4357 at 22.572 kb on + strand, within EX28DRAFT_4357 at 22.583 kb on - strand, within EX28DRAFT_4357 at 22.584 kb on + strand, within EX28DRAFT_4357 at 22.585 kb on - strand, within EX28DRAFT_4357 at 22.585 kb on - strand, within EX28DRAFT_4357 at 22.585 kb on - strand, within EX28DRAFT_4357 at 22.592 kb on + strand, within EX28DRAFT_4357 at 22.644 kb on + strand, within EX28DRAFT_4357 at 22.700 kb on - strand, within EX28DRAFT_4357 at 22.800 kb on - strand, within EX28DRAFT_4357 at 22.922 kb on - strand, within EX28DRAFT_4357 at 22.922 kb on - strand, within EX28DRAFT_4357 at 22.977 kb on + strand, within EX28DRAFT_4357 at 22.978 kb on - strand, within EX28DRAFT_4357 at 22.978 kb on - strand, within EX28DRAFT_4357 at 23.005 kb on - strand, within EX28DRAFT_4357 at 23.049 kb on + strand, within EX28DRAFT_4357 at 23.050 kb on - strand, within EX28DRAFT_4357 at 23.053 kb on - strand, within EX28DRAFT_4357 at 23.094 kb on - strand, within EX28DRAFT_4357 at 23.097 kb on + strand, within EX28DRAFT_4357 at 23.097 kb on + strand, within EX28DRAFT_4357 at 23.098 kb on - strand, within EX28DRAFT_4357 at 23.098 kb on - strand, within EX28DRAFT_4357 at 23.193 kb on + strand, within EX28DRAFT_4357 at 23.194 kb on - strand, within EX28DRAFT_4357 at 23.197 kb on + strand, within EX28DRAFT_4357 at 23.198 kb on - strand, within EX28DRAFT_4357 at 23.198 kb on - strand, within EX28DRAFT_4357 at 23.261 kb on - strand, within EX28DRAFT_4357 at 23.411 kb on - strand at 23.516 kb on - strand at 23.549 kb on + strand at 23.549 kb on + strand at 23.550 kb on - strand at 23.550 kb on - strand at 23.550 kb on - strand at 23.550 kb on - strand at 23.550 kb on - strand at 23.552 kb on - strand at 23.552 kb on - strand at 23.552 kb on - strand at 23.564 kb on - strand at 23.632 kb on - strand at 23.683 kb on + strand at 23.683 kb on + strand at 23.718 kb on + strand, within EX28DRAFT_4358 at 23.719 kb on - strand, within EX28DRAFT_4358 at 23.719 kb on - strand, within EX28DRAFT_4358 at 23.776 kb on + strand, within EX28DRAFT_4358 at 23.851 kb on + strand, within EX28DRAFT_4358 at 23.898 kb on + strand, within EX28DRAFT_4358 at 23.898 kb on + strand, within EX28DRAFT_4358 at 23.899 kb on - strand, within EX28DRAFT_4358 at 23.899 kb on - strand, within EX28DRAFT_4358 at 24.139 kb on + strand, within EX28DRAFT_4358 at 24.274 kb on + strand, within EX28DRAFT_4358 at 24.274 kb on + strand, within EX28DRAFT_4358 at 24.275 kb on - strand, within EX28DRAFT_4358 at 24.275 kb on - strand, within EX28DRAFT_4358 at 24.275 kb on - strand, within EX28DRAFT_4358 at 24.545 kb on - strand, within EX28DRAFT_4358
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 20,574 + EX28DRAFT_4356 0.33 +0.5 20,575 - EX28DRAFT_4356 0.33 -0.5 20,661 + EX28DRAFT_4356 0.39 +1.4 20,661 + EX28DRAFT_4356 0.39 +0.6 20,662 - EX28DRAFT_4356 0.39 +0.3 20,662 - EX28DRAFT_4356 0.39 -0.1 20,662 - EX28DRAFT_4356 0.39 -0.4 20,691 + EX28DRAFT_4356 0.42 +0.5 20,692 - EX28DRAFT_4356 0.42 +1.9 20,700 + EX28DRAFT_4356 0.42 +0.8 20,703 + EX28DRAFT_4356 0.42 -0.7 20,768 - EX28DRAFT_4356 0.47 +0.8 20,853 + EX28DRAFT_4356 0.53 -0.0 20,875 - EX28DRAFT_4356 0.55 -0.6 20,887 + EX28DRAFT_4356 0.56 +0.3 20,887 + EX28DRAFT_4356 0.56 -0.1 20,888 - EX28DRAFT_4356 0.56 +0.9 20,888 - EX28DRAFT_4356 0.56 +0.0 20,932 - EX28DRAFT_4356 0.59 +3.0 20,932 - EX28DRAFT_4356 0.59 -0.4 20,987 - EX28DRAFT_4356 0.63 -0.6 21,118 - EX28DRAFT_4356 0.72 +0.4 21,220 - EX28DRAFT_4356 0.80 +0.3 21,342 + EX28DRAFT_4356 0.89 -0.0 21,373 - +0.1 21,416 - +0.3 21,455 - -2.0 21,467 + +0.3 21,468 - -3.2 21,487 + +0.2 21,488 - +0.0 21,488 - -0.6 21,488 - -0.5 21,500 + -0.8 21,501 - +0.3 21,503 + -0.5 21,504 - -0.2 21,504 - -4.6 21,550 + -1.0 21,551 - +1.3 21,557 + +0.4 21,557 + +0.6 21,558 - +0.5 21,558 - +0.3 21,558 - -2.0 21,696 + -0.3 21,762 + EX28DRAFT_4357 0.11 +0.8 21,769 - EX28DRAFT_4357 0.11 -1.3 21,802 - EX28DRAFT_4357 0.13 +0.3 21,870 + EX28DRAFT_4357 0.16 +1.0 21,871 - EX28DRAFT_4357 0.16 +0.7 22,057 + EX28DRAFT_4357 0.25 -0.3 22,274 - EX28DRAFT_4357 0.36 +0.4 22,274 - EX28DRAFT_4357 0.36 +0.9 22,357 - EX28DRAFT_4357 0.40 +0.9 22,470 + EX28DRAFT_4357 0.46 +0.1 22,572 + EX28DRAFT_4357 0.51 +0.3 22,583 - EX28DRAFT_4357 0.51 -0.2 22,584 + EX28DRAFT_4357 0.51 +0.5 22,585 - EX28DRAFT_4357 0.51 +0.2 22,585 - EX28DRAFT_4357 0.51 +1.3 22,585 - EX28DRAFT_4357 0.51 +1.2 22,592 + EX28DRAFT_4357 0.52 +0.2 22,644 + EX28DRAFT_4357 0.54 +0.1 22,700 - EX28DRAFT_4357 0.57 -0.2 22,800 - EX28DRAFT_4357 0.62 +0.5 22,922 - EX28DRAFT_4357 0.68 +0.4 22,922 - EX28DRAFT_4357 0.68 -0.1 22,977 + EX28DRAFT_4357 0.71 -1.8 22,978 - EX28DRAFT_4357 0.71 -1.5 22,978 - EX28DRAFT_4357 0.71 +0.4 23,005 - EX28DRAFT_4357 0.72 -4.3 23,049 + EX28DRAFT_4357 0.74 +0.1 23,050 - EX28DRAFT_4357 0.74 -0.1 23,053 - EX28DRAFT_4357 0.74 +0.6 23,094 - EX28DRAFT_4357 0.76 +1.7 23,097 + EX28DRAFT_4357 0.77 -3.5 23,097 + EX28DRAFT_4357 0.77 -0.2 23,098 - EX28DRAFT_4357 0.77 +0.6 23,098 - EX28DRAFT_4357 0.77 +1.0 23,193 + EX28DRAFT_4357 0.81 -1.6 23,194 - EX28DRAFT_4357 0.81 -3.9 23,197 + EX28DRAFT_4357 0.82 +0.6 23,198 - EX28DRAFT_4357 0.82 -0.0 23,198 - EX28DRAFT_4357 0.82 +0.5 23,261 - EX28DRAFT_4357 0.85 -2.1 23,411 - +0.7 23,516 - +0.1 23,549 + +2.1 23,549 + -0.4 23,550 - +0.1 23,550 - +0.2 23,550 - -0.6 23,550 - +0.9 23,550 - -0.6 23,552 - +0.2 23,552 - +0.2 23,552 - +0.6 23,564 - +1.4 23,632 - -4.7 23,683 + +0.4 23,683 + -1.6 23,718 + EX28DRAFT_4358 0.11 -1.2 23,719 - EX28DRAFT_4358 0.11 +1.8 23,719 - EX28DRAFT_4358 0.11 +0.2 23,776 + EX28DRAFT_4358 0.15 -1.2 23,851 + EX28DRAFT_4358 0.21 +0.8 23,898 + EX28DRAFT_4358 0.25 +0.2 23,898 + EX28DRAFT_4358 0.25 +0.9 23,899 - EX28DRAFT_4358 0.25 +0.5 23,899 - EX28DRAFT_4358 0.25 -0.2 24,139 + EX28DRAFT_4358 0.45 -0.4 24,274 + EX28DRAFT_4358 0.55 +0.1 24,274 + EX28DRAFT_4358 0.55 +0.8 24,275 - EX28DRAFT_4358 0.55 -0.1 24,275 - EX28DRAFT_4358 0.55 +0.1 24,275 - EX28DRAFT_4358 0.55 +0.5 24,545 - EX28DRAFT_4358 0.77 +1.7
Or see this region's nucleotide sequence