Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4340

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4337 and EX28DRAFT_4338 overlap by 4 nucleotidesEX28DRAFT_4338 and EX28DRAFT_4339 are separated by 68 nucleotidesEX28DRAFT_4339 and EX28DRAFT_4340 are separated by 75 nucleotidesEX28DRAFT_4340 and EX28DRAFT_4341 are separated by 27 nucleotidesEX28DRAFT_4341 and EX28DRAFT_4342 are separated by 23 nucleotides EX28DRAFT_4337: EX28DRAFT_4337 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 389 to 892 _4337 EX28DRAFT_4338: EX28DRAFT_4338 - molybdenum cofactor guanylyltransferase, proteobacterial, at 889 to 1,473 _4338 EX28DRAFT_4339: EX28DRAFT_4339 - Uncharacterized protein conserved in bacteria, at 1,542 to 1,811 _4339 EX28DRAFT_4340: EX28DRAFT_4340 - Putative homoserine kinase type II (protein kinase fold), at 1,887 to 2,873 _4340 EX28DRAFT_4341: EX28DRAFT_4341 - Protein-disulfide isomerase, at 2,901 to 3,524 _4341 EX28DRAFT_4342: EX28DRAFT_4342 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,548 to 4,456 _4342 Position (kb) 1 2 3Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 0.887 kb on + strandat 1.029 kb on - strand, within EX28DRAFT_4338at 1.029 kb on - strand, within EX28DRAFT_4338at 1.100 kb on - strand, within EX28DRAFT_4338at 1.216 kb on + strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.350 kb on + strand, within EX28DRAFT_4338at 1.351 kb on - strand, within EX28DRAFT_4338at 1.477 kb on + strandat 1.489 kb on + strandat 1.490 kb on - strandat 1.509 kb on + strandat 1.522 kb on + strandat 1.550 kb on + strandat 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.743 kb on - strand, within EX28DRAFT_4339at 1.769 kb on + strand, within EX28DRAFT_4339at 1.798 kb on + strandat 1.799 kb on - strandat 1.809 kb on + strandat 1.809 kb on + strandat 1.867 kb on + strandat 1.867 kb on + strandat 1.918 kb on + strandat 1.919 kb on - strandat 2.055 kb on + strand, within EX28DRAFT_4340at 2.157 kb on - strand, within EX28DRAFT_4340at 2.157 kb on - strand, within EX28DRAFT_4340at 2.191 kb on - strand, within EX28DRAFT_4340at 2.191 kb on - strand, within EX28DRAFT_4340at 2.193 kb on + strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.241 kb on - strand, within EX28DRAFT_4340at 2.281 kb on + strand, within EX28DRAFT_4340at 2.281 kb on + strand, within EX28DRAFT_4340at 2.282 kb on - strand, within EX28DRAFT_4340at 2.340 kb on + strand, within EX28DRAFT_4340at 2.362 kb on + strand, within EX28DRAFT_4340at 2.640 kb on + strand, within EX28DRAFT_4340at 2.641 kb on - strand, within EX28DRAFT_4340at 2.660 kb on + strand, within EX28DRAFT_4340at 2.660 kb on + strand, within EX28DRAFT_4340at 2.712 kb on + strand, within EX28DRAFT_4340at 2.716 kb on - strand, within EX28DRAFT_4340at 2.716 kb on - strand, within EX28DRAFT_4340at 2.806 kb on + strandat 2.806 kb on + strandat 2.810 kb on + strandat 2.810 kb on + strandat 2.811 kb on - strandat 2.811 kb on - strandat 2.868 kb on + strandat 2.868 kb on + strandat 2.872 kb on - strandat 2.896 kb on + strandat 2.897 kb on - strandat 3.319 kb on - strand, within EX28DRAFT_4341at 3.319 kb on - strand, within EX28DRAFT_4341at 3.429 kb on + strand, within EX28DRAFT_4341at 3.430 kb on - strand, within EX28DRAFT_4341at 3.470 kb on + strandat 3.470 kb on + strandat 3.487 kb on - strandat 3.487 kb on - strandat 3.568 kb on - strandat 3.578 kb on - strandat 3.588 kb on - strandat 3.588 kb on - strandat 3.616 kb on + strandat 3.617 kb on - strandat 3.620 kb on - strandat 3.653 kb on - strand, within EX28DRAFT_4342at 3.664 kb on - strand, within EX28DRAFT_4342at 3.664 kb on - strand, within EX28DRAFT_4342at 3.664 kb on - strand, within EX28DRAFT_4342at 3.740 kb on - strand, within EX28DRAFT_4342at 3.742 kb on + strand, within EX28DRAFT_4342at 3.757 kb on + strand, within EX28DRAFT_4342at 3.758 kb on - strand, within EX28DRAFT_4342

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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887 + -2.1
1,029 - EX28DRAFT_4338 0.24 -0.2
1,029 - EX28DRAFT_4338 0.24 +0.9
1,100 - EX28DRAFT_4338 0.36 +0.3
1,216 + EX28DRAFT_4338 0.56 +0.9
1,293 - EX28DRAFT_4338 0.69 +0.7
1,293 - EX28DRAFT_4338 0.69 +1.4
1,350 + EX28DRAFT_4338 0.79 +0.6
1,351 - EX28DRAFT_4338 0.79 +0.8
1,477 + -1.8
1,489 + -0.1
1,490 - -0.3
1,509 + -0.2
1,522 + +0.3
1,550 + +0.4
1,695 + EX28DRAFT_4339 0.57 -0.5
1,695 + EX28DRAFT_4339 0.57 -0.1
1,695 + EX28DRAFT_4339 0.57 +0.1
1,704 - EX28DRAFT_4339 0.60 +0.1
1,704 - EX28DRAFT_4339 0.60 +0.2
1,743 - EX28DRAFT_4339 0.74 +1.0
1,769 + EX28DRAFT_4339 0.84 -0.1
1,798 + -0.8
1,799 - -0.9
1,809 + -0.8
1,809 + -0.4
1,867 + -2.7
1,867 + -1.7
1,918 + -1.2
1,919 - -0.1
2,055 + EX28DRAFT_4340 0.17 +0.3
2,157 - EX28DRAFT_4340 0.27 +0.2
2,157 - EX28DRAFT_4340 0.27 -0.4
2,191 - EX28DRAFT_4340 0.31 -2.7
2,191 - EX28DRAFT_4340 0.31 -0.6
2,193 + EX28DRAFT_4340 0.31 -0.4
2,194 - EX28DRAFT_4340 0.31 -0.3
2,194 - EX28DRAFT_4340 0.31 -0.1
2,194 - EX28DRAFT_4340 0.31 +0.1
2,194 - EX28DRAFT_4340 0.31 -1.0
2,241 - EX28DRAFT_4340 0.36 -0.6
2,281 + EX28DRAFT_4340 0.40 -1.5
2,281 + EX28DRAFT_4340 0.40 -1.1
2,282 - EX28DRAFT_4340 0.40 -1.0
2,340 + EX28DRAFT_4340 0.46 -4.0
2,362 + EX28DRAFT_4340 0.48 -0.2
2,640 + EX28DRAFT_4340 0.76 -0.9
2,641 - EX28DRAFT_4340 0.76 -0.7
2,660 + EX28DRAFT_4340 0.78 -0.1
2,660 + EX28DRAFT_4340 0.78 -0.9
2,712 + EX28DRAFT_4340 0.84 -0.7
2,716 - EX28DRAFT_4340 0.84 -0.8
2,716 - EX28DRAFT_4340 0.84 -1.6
2,806 + +0.6
2,806 + +0.2
2,810 + +0.0
2,810 + +0.2
2,811 - -2.6
2,811 - -0.6
2,868 + -0.5
2,868 + -0.3
2,872 - -3.8
2,896 + -2.6
2,897 - -0.3
3,319 - EX28DRAFT_4341 0.67 -3.1
3,319 - EX28DRAFT_4341 0.67 +0.0
3,429 + EX28DRAFT_4341 0.85 -4.2
3,430 - EX28DRAFT_4341 0.85 -3.6
3,470 + -3.0
3,470 + -3.2
3,487 - -2.9
3,487 - -4.9
3,568 - -1.2
3,578 - -0.8
3,588 - -1.2
3,588 - +0.9
3,616 + +3.1
3,617 - +0.5
3,620 - +0.1
3,653 - EX28DRAFT_4342 0.12 -1.0
3,664 - EX28DRAFT_4342 0.13 +0.8
3,664 - EX28DRAFT_4342 0.13 -0.1
3,664 - EX28DRAFT_4342 0.13 +1.1
3,740 - EX28DRAFT_4342 0.21 +0.6
3,742 + EX28DRAFT_4342 0.21 +0.5
3,757 + EX28DRAFT_4342 0.23 -2.2
3,758 - EX28DRAFT_4342 0.23 +1.1

Or see this region's nucleotide sequence