Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4221 and EX28DRAFT_4222 are separated by 240 nucleotides EX28DRAFT_4222 and EX28DRAFT_4223 are separated by 5 nucleotides
EX28DRAFT_4221: EX28DRAFT_4221 - Sugar kinases, ribokinase family, at 27,897 to 28,910
_4221
EX28DRAFT_4222: EX28DRAFT_4222 - hypothetical protein, at 29,151 to 29,729
_4222
EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949
_4223
Position (kb) 29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.488 kb on + strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.562 kb on + strand, within EX28DRAFT_4221 at 28.797 kb on + strand, within EX28DRAFT_4221 at 28.798 kb on - strand, within EX28DRAFT_4221 at 28.892 kb on + strand at 28.913 kb on + strand at 28.931 kb on + strand at 28.942 kb on + strand at 28.964 kb on + strand at 28.985 kb on - strand at 29.108 kb on + strand at 29.108 kb on + strand at 29.109 kb on - strand at 29.294 kb on + strand, within EX28DRAFT_4222 at 29.343 kb on + strand, within EX28DRAFT_4222 at 29.437 kb on - strand, within EX28DRAFT_4222 at 29.439 kb on - strand, within EX28DRAFT_4222 at 29.441 kb on - strand, within EX28DRAFT_4222 at 29.444 kb on + strand, within EX28DRAFT_4222 at 29.445 kb on - strand, within EX28DRAFT_4222 at 29.484 kb on + strand, within EX28DRAFT_4222 at 29.489 kb on - strand, within EX28DRAFT_4222 at 29.637 kb on + strand, within EX28DRAFT_4222 at 29.638 kb on - strand, within EX28DRAFT_4222 at 29.770 kb on + strand at 29.849 kb on - strand at 29.933 kb on - strand, within EX28DRAFT_4223 at 29.939 kb on + strand, within EX28DRAFT_4223 at 29.984 kb on - strand, within EX28DRAFT_4223 at 30.097 kb on + strand, within EX28DRAFT_4223 at 30.102 kb on + strand, within EX28DRAFT_4223 at 30.103 kb on - strand, within EX28DRAFT_4223 at 30.340 kb on - strand, within EX28DRAFT_4223 at 30.421 kb on - strand, within EX28DRAFT_4223 at 30.496 kb on + strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.557 kb on - strand, within EX28DRAFT_4223
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 28,488 + EX28DRAFT_4221 0.58 +0.2 28,489 - EX28DRAFT_4221 0.58 -2.4 28,489 - EX28DRAFT_4221 0.58 -0.7 28,562 + EX28DRAFT_4221 0.66 -0.9 28,797 + EX28DRAFT_4221 0.89 +2.1 28,798 - EX28DRAFT_4221 0.89 -0.2 28,892 + -0.4 28,913 + +0.2 28,931 + -0.5 28,942 + -0.6 28,964 + -0.2 28,985 - -0.3 29,108 + -0.2 29,108 + -2.2 29,109 - +0.1 29,294 + EX28DRAFT_4222 0.25 +1.8 29,343 + EX28DRAFT_4222 0.33 +2.0 29,437 - EX28DRAFT_4222 0.49 +0.7 29,439 - EX28DRAFT_4222 0.50 +1.3 29,441 - EX28DRAFT_4222 0.50 -0.0 29,444 + EX28DRAFT_4222 0.51 -0.6 29,445 - EX28DRAFT_4222 0.51 -0.6 29,484 + EX28DRAFT_4222 0.58 +0.8 29,489 - EX28DRAFT_4222 0.58 -0.8 29,637 + EX28DRAFT_4222 0.84 +0.1 29,638 - EX28DRAFT_4222 0.84 +1.2 29,770 + +0.4 29,849 - +0.0 29,933 - EX28DRAFT_4223 0.16 +0.2 29,939 + EX28DRAFT_4223 0.17 +0.2 29,984 - EX28DRAFT_4223 0.20 -0.2 30,097 + EX28DRAFT_4223 0.30 -0.2 30,102 + EX28DRAFT_4223 0.30 +0.0 30,103 - EX28DRAFT_4223 0.30 +0.5 30,340 - EX28DRAFT_4223 0.50 +0.2 30,421 - EX28DRAFT_4223 0.56 +0.2 30,496 + EX28DRAFT_4223 0.63 -1.2 30,519 - EX28DRAFT_4223 0.65 +0.1 30,519 - EX28DRAFT_4223 0.65 -0.1 30,557 - EX28DRAFT_4223 0.68 +0.5
Or see this region's nucleotide sequence