Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4146 and EX28DRAFT_4147 are separated by 120 nucleotides EX28DRAFT_4147 and EX28DRAFT_4148 overlap by 4 nucleotides EX28DRAFT_4148 and EX28DRAFT_4149 are separated by 3 nucleotides EX28DRAFT_4149 and EX28DRAFT_4150 overlap by 11 nucleotides
EX28DRAFT_4146: EX28DRAFT_4146 - penicillin-binding protein, 1A family, at 127,101 to 129,653
_4146
EX28DRAFT_4147: EX28DRAFT_4147 - hypothetical protein, at 129,774 to 130,550
_4147
EX28DRAFT_4148: EX28DRAFT_4148 - Tfp pilus assembly protein PilN, at 130,547 to 131,041
_4148
EX28DRAFT_4149: EX28DRAFT_4149 - hypothetical protein, at 131,045 to 131,500
_4149
EX28DRAFT_4150: EX28DRAFT_4150 - Protein of unknown function (DUF2531), at 131,490 to 131,894
_4150
Position (kb) 129
130
131 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 128.828 kb on - strand, within EX28DRAFT_4146 at 128.900 kb on - strand, within EX28DRAFT_4146 at 128.953 kb on + strand, within EX28DRAFT_4146 at 128.953 kb on + strand, within EX28DRAFT_4146 at 128.954 kb on - strand, within EX28DRAFT_4146 at 128.954 kb on - strand, within EX28DRAFT_4146 at 128.969 kb on + strand, within EX28DRAFT_4146 at 128.970 kb on - strand, within EX28DRAFT_4146 at 129.107 kb on - strand, within EX28DRAFT_4146 at 129.167 kb on - strand, within EX28DRAFT_4146 at 129.167 kb on - strand, within EX28DRAFT_4146 at 129.236 kb on + strand, within EX28DRAFT_4146 at 129.237 kb on - strand, within EX28DRAFT_4146 at 129.296 kb on + strand, within EX28DRAFT_4146 at 129.297 kb on - strand, within EX28DRAFT_4146 at 129.382 kb on + strand, within EX28DRAFT_4146 at 129.418 kb on - strand at 129.418 kb on - strand at 129.442 kb on - strand at 129.502 kb on + strand at 129.503 kb on - strand at 129.571 kb on + strand at 129.571 kb on + strand at 129.571 kb on + strand at 129.572 kb on - strand at 129.578 kb on - strand at 129.578 kb on - strand at 129.579 kb on + strand at 129.637 kb on + strand at 129.637 kb on + strand at 129.638 kb on - strand at 129.642 kb on + strand at 129.643 kb on - strand at 129.690 kb on + strand at 129.708 kb on + strand at 129.708 kb on + strand at 129.709 kb on - strand at 129.709 kb on - strand at 129.709 kb on - strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.733 kb on + strand at 129.734 kb on - strand at 129.734 kb on - strand at 129.734 kb on - strand at 129.735 kb on + strand at 129.736 kb on - strand at 129.806 kb on + strand at 129.978 kb on + strand, within EX28DRAFT_4147 at 130.157 kb on + strand, within EX28DRAFT_4147 at 130.157 kb on + strand, within EX28DRAFT_4147 at 130.158 kb on - strand, within EX28DRAFT_4147 at 130.506 kb on + strand at 131.027 kb on - strand at 131.059 kb on - strand at 131.459 kb on - strand at 131.533 kb on + strand, within EX28DRAFT_4150 at 131.533 kb on + strand, within EX28DRAFT_4150
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 128,828 - EX28DRAFT_4146 0.68 +1.0 128,900 - EX28DRAFT_4146 0.70 -0.0 128,953 + EX28DRAFT_4146 0.73 -0.1 128,953 + EX28DRAFT_4146 0.73 +0.1 128,954 - EX28DRAFT_4146 0.73 -0.0 128,954 - EX28DRAFT_4146 0.73 +0.4 128,969 + EX28DRAFT_4146 0.73 -0.7 128,970 - EX28DRAFT_4146 0.73 +0.4 129,107 - EX28DRAFT_4146 0.79 +0.9 129,167 - EX28DRAFT_4146 0.81 -0.6 129,167 - EX28DRAFT_4146 0.81 -0.1 129,236 + EX28DRAFT_4146 0.84 -0.0 129,237 - EX28DRAFT_4146 0.84 -2.2 129,296 + EX28DRAFT_4146 0.86 -0.3 129,297 - EX28DRAFT_4146 0.86 -0.5 129,382 + EX28DRAFT_4146 0.89 -0.3 129,418 - -0.5 129,418 - -4.2 129,442 - -0.3 129,502 + -2.1 129,503 - +0.7 129,571 + -0.4 129,571 + -3.1 129,571 + -3.9 129,572 - -1.1 129,578 - -0.3 129,578 - +0.6 129,579 + -0.2 129,637 + +0.0 129,637 + +0.8 129,638 - +0.6 129,642 + -0.2 129,643 - +0.8 129,690 + +1.6 129,708 + -0.1 129,708 + -0.6 129,709 - +0.2 129,709 - +0.5 129,709 - +0.4 129,733 + +0.9 129,733 + -2.4 129,733 + -1.0 129,733 + -0.1 129,733 + -0.0 129,734 - +0.4 129,734 - +1.7 129,734 - +1.9 129,735 + -1.6 129,736 - +0.4 129,806 + -0.3 129,978 + EX28DRAFT_4147 0.26 +0.4 130,157 + EX28DRAFT_4147 0.49 -2.3 130,157 + EX28DRAFT_4147 0.49 +0.1 130,158 - EX28DRAFT_4147 0.49 +0.0 130,506 + -0.4 131,027 - -1.8 131,059 - -0.1 131,459 - -0.4 131,533 + EX28DRAFT_4150 0.11 -0.9 131,533 + EX28DRAFT_4150 0.11 -1.4
Or see this region's nucleotide sequence