Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4119

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4118 and EX28DRAFT_4119 are separated by 18 nucleotidesEX28DRAFT_4119 and EX28DRAFT_4120 are separated by 95 nucleotides EX28DRAFT_4118: EX28DRAFT_4118 - glycogen/starch synthase, ADP-glucose type, at 91,629 to 93,062 _4118 EX28DRAFT_4119: EX28DRAFT_4119 - glycogen/starch/alpha-glucan phosphorylases, at 93,081 to 95,528 _4119 EX28DRAFT_4120: EX28DRAFT_4120 - Glycerol-3-phosphate dehydrogenase, at 95,624 to 97,132 _4120 Position (kb) 93 94 95 96Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 92.111 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.136 kb on + strand, within EX28DRAFT_4118at 92.137 kb on - strand, within EX28DRAFT_4118at 92.137 kb on - strand, within EX28DRAFT_4118at 92.179 kb on - strand, within EX28DRAFT_4118at 92.180 kb on + strand, within EX28DRAFT_4118at 92.239 kb on - strand, within EX28DRAFT_4118at 92.249 kb on + strand, within EX28DRAFT_4118at 92.249 kb on + strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.272 kb on - strand, within EX28DRAFT_4118at 92.578 kb on + strand, within EX28DRAFT_4118at 92.906 kb on + strand, within EX28DRAFT_4118at 92.907 kb on - strand, within EX28DRAFT_4118at 93.009 kb on - strandat 93.009 kb on - strandat 93.045 kb on + strandat 93.060 kb on + strandat 93.060 kb on + strandat 93.060 kb on + strandat 93.080 kb on + strandat 93.095 kb on + strandat 93.095 kb on + strandat 93.095 kb on + strandat 93.100 kb on - strandat 93.147 kb on + strandat 93.185 kb on - strandat 93.185 kb on - strandat 93.239 kb on - strandat 93.239 kb on - strandat 93.301 kb on - strandat 93.301 kb on - strandat 93.301 kb on - strandat 93.359 kb on + strand, within EX28DRAFT_4119at 93.359 kb on + strand, within EX28DRAFT_4119at 93.360 kb on - strand, within EX28DRAFT_4119at 93.360 kb on - strand, within EX28DRAFT_4119at 93.401 kb on - strand, within EX28DRAFT_4119at 93.401 kb on - strand, within EX28DRAFT_4119at 93.401 kb on - strand, within EX28DRAFT_4119at 93.406 kb on + strand, within EX28DRAFT_4119at 93.406 kb on + strand, within EX28DRAFT_4119at 93.542 kb on + strand, within EX28DRAFT_4119at 93.542 kb on + strand, within EX28DRAFT_4119at 93.542 kb on + strand, within EX28DRAFT_4119at 93.543 kb on - strand, within EX28DRAFT_4119at 93.543 kb on - strand, within EX28DRAFT_4119at 93.591 kb on + strand, within EX28DRAFT_4119at 93.623 kb on + strand, within EX28DRAFT_4119at 93.643 kb on - strand, within EX28DRAFT_4119at 93.834 kb on + strand, within EX28DRAFT_4119at 93.835 kb on - strand, within EX28DRAFT_4119at 93.855 kb on - strand, within EX28DRAFT_4119at 93.906 kb on + strand, within EX28DRAFT_4119at 93.906 kb on + strand, within EX28DRAFT_4119at 93.907 kb on - strand, within EX28DRAFT_4119at 93.907 kb on - strand, within EX28DRAFT_4119at 94.002 kb on + strand, within EX28DRAFT_4119at 94.003 kb on - strand, within EX28DRAFT_4119at 94.098 kb on - strand, within EX28DRAFT_4119at 94.098 kb on - strand, within EX28DRAFT_4119at 94.098 kb on - strand, within EX28DRAFT_4119at 94.138 kb on + strand, within EX28DRAFT_4119at 94.139 kb on - strand, within EX28DRAFT_4119at 94.139 kb on - strand, within EX28DRAFT_4119at 94.317 kb on - strand, within EX28DRAFT_4119at 94.544 kb on + strand, within EX28DRAFT_4119at 94.743 kb on + strand, within EX28DRAFT_4119at 94.743 kb on + strand, within EX28DRAFT_4119at 94.744 kb on - strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.775 kb on - strand, within EX28DRAFT_4119at 94.785 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.867 kb on - strand, within EX28DRAFT_4119at 94.903 kb on + strand, within EX28DRAFT_4119at 94.904 kb on - strand, within EX28DRAFT_4119at 94.904 kb on - strand, within EX28DRAFT_4119at 94.968 kb on + strand, within EX28DRAFT_4119at 94.968 kb on + strand, within EX28DRAFT_4119at 95.058 kb on - strand, within EX28DRAFT_4119at 95.058 kb on - strand, within EX28DRAFT_4119at 95.148 kb on - strand, within EX28DRAFT_4119at 95.166 kb on - strand, within EX28DRAFT_4119at 95.217 kb on + strand, within EX28DRAFT_4119at 95.240 kb on - strand, within EX28DRAFT_4119at 95.277 kb on - strand, within EX28DRAFT_4119at 95.325 kb on - strandat 95.340 kb on + strandat 95.436 kb on + strandat 95.436 kb on + strandat 95.437 kb on - strandat 95.437 kb on - strandat 95.438 kb on + strandat 95.439 kb on - strandat 95.439 kb on - strandat 95.450 kb on + strandat 95.457 kb on + strandat 95.457 kb on + strandat 95.458 kb on - strandat 95.507 kb on + strandat 95.507 kb on + strandat 95.507 kb on + strandat 95.526 kb on + strandat 95.527 kb on - strandat 95.734 kb on + strandat 96.016 kb on - strand, within EX28DRAFT_4120at 96.131 kb on - strand, within EX28DRAFT_4120at 96.131 kb on - strand, within EX28DRAFT_4120at 96.247 kb on - strand, within EX28DRAFT_4120at 96.261 kb on + strand, within EX28DRAFT_4120at 96.310 kb on - strand, within EX28DRAFT_4120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
92,111 + EX28DRAFT_4118 0.34 +0.9
92,133 + EX28DRAFT_4118 0.35 +1.2
92,133 + EX28DRAFT_4118 0.35 -0.7
92,133 + EX28DRAFT_4118 0.35 +0.4
92,133 + EX28DRAFT_4118 0.35 +0.1
92,134 - EX28DRAFT_4118 0.35 +1.5
92,134 - EX28DRAFT_4118 0.35 +1.4
92,134 - EX28DRAFT_4118 0.35 -0.2
92,134 - EX28DRAFT_4118 0.35 +0.3
92,134 - EX28DRAFT_4118 0.35 +0.4
92,134 - EX28DRAFT_4118 0.35 -1.6
92,134 - EX28DRAFT_4118 0.35 -0.1
92,134 - EX28DRAFT_4118 0.35 +0.0
92,136 + EX28DRAFT_4118 0.35 +0.5
92,137 - EX28DRAFT_4118 0.35 +0.2
92,137 - EX28DRAFT_4118 0.35 +0.9
92,179 - EX28DRAFT_4118 0.38 +0.8
92,180 + EX28DRAFT_4118 0.38 +0.5
92,239 - EX28DRAFT_4118 0.43 +0.8
92,249 + EX28DRAFT_4118 0.43 +0.7
92,249 + EX28DRAFT_4118 0.43 +1.3
92,250 - EX28DRAFT_4118 0.43 +1.5
92,250 - EX28DRAFT_4118 0.43 +1.0
92,250 - EX28DRAFT_4118 0.43 +0.4
92,250 - EX28DRAFT_4118 0.43 -3.0
92,272 - EX28DRAFT_4118 0.45 +0.2
92,578 + EX28DRAFT_4118 0.66 +0.7
92,906 + EX28DRAFT_4118 0.89 +1.8
92,907 - EX28DRAFT_4118 0.89 -1.2
93,009 - +0.7
93,009 - -0.0
93,045 + +0.4
93,060 + +0.1
93,060 + +0.5
93,060 + +1.1
93,080 + +1.0
93,095 + -3.7
93,095 + +0.5
93,095 + +0.3
93,100 - -0.1
93,147 + +0.9
93,185 - -0.1
93,185 - -0.0
93,239 - -0.4
93,239 - -0.4
93,301 - +0.6
93,301 - -1.3
93,301 - -1.3
93,359 + EX28DRAFT_4119 0.11 -0.5
93,359 + EX28DRAFT_4119 0.11 -0.2
93,360 - EX28DRAFT_4119 0.11 +0.2
93,360 - EX28DRAFT_4119 0.11 -0.1
93,401 - EX28DRAFT_4119 0.13 -0.2
93,401 - EX28DRAFT_4119 0.13 -0.6
93,401 - EX28DRAFT_4119 0.13 +0.1
93,406 + EX28DRAFT_4119 0.13 +1.2
93,406 + EX28DRAFT_4119 0.13 +2.5
93,542 + EX28DRAFT_4119 0.19 +0.6
93,542 + EX28DRAFT_4119 0.19 +0.2
93,542 + EX28DRAFT_4119 0.19 -1.0
93,543 - EX28DRAFT_4119 0.19 -0.2
93,543 - EX28DRAFT_4119 0.19 +0.4
93,591 + EX28DRAFT_4119 0.21 +0.6
93,623 + EX28DRAFT_4119 0.22 -0.1
93,643 - EX28DRAFT_4119 0.23 +0.5
93,834 + EX28DRAFT_4119 0.31 +0.6
93,835 - EX28DRAFT_4119 0.31 -0.5
93,855 - EX28DRAFT_4119 0.32 -1.7
93,906 + EX28DRAFT_4119 0.34 +0.0
93,906 + EX28DRAFT_4119 0.34 -0.6
93,907 - EX28DRAFT_4119 0.34 -2.3
93,907 - EX28DRAFT_4119 0.34 -0.7
94,002 + EX28DRAFT_4119 0.38 -1.3
94,003 - EX28DRAFT_4119 0.38 -0.1
94,098 - EX28DRAFT_4119 0.42 +0.3
94,098 - EX28DRAFT_4119 0.42 +0.1
94,098 - EX28DRAFT_4119 0.42 -2.8
94,138 + EX28DRAFT_4119 0.43 -0.2
94,139 - EX28DRAFT_4119 0.43 +0.2
94,139 - EX28DRAFT_4119 0.43 -0.1
94,317 - EX28DRAFT_4119 0.50 -1.0
94,544 + EX28DRAFT_4119 0.60 -0.1
94,743 + EX28DRAFT_4119 0.68 -0.6
94,743 + EX28DRAFT_4119 0.68 +0.4
94,744 - EX28DRAFT_4119 0.68 -0.1
94,774 + EX28DRAFT_4119 0.69 -0.3
94,774 + EX28DRAFT_4119 0.69 -1.1
94,774 + EX28DRAFT_4119 0.69 +0.0
94,774 + EX28DRAFT_4119 0.69 +0.1
94,775 - EX28DRAFT_4119 0.69 -3.1
94,785 + EX28DRAFT_4119 0.70 +0.9
94,866 + EX28DRAFT_4119 0.73 -0.3
94,866 + EX28DRAFT_4119 0.73 -2.5
94,866 + EX28DRAFT_4119 0.73 -0.1
94,866 + EX28DRAFT_4119 0.73 -0.2
94,866 + EX28DRAFT_4119 0.73 -0.9
94,866 + EX28DRAFT_4119 0.73 -0.4
94,866 + EX28DRAFT_4119 0.73 -3.5
94,867 - EX28DRAFT_4119 0.73 -0.3
94,903 + EX28DRAFT_4119 0.74 -0.8
94,904 - EX28DRAFT_4119 0.74 -2.6
94,904 - EX28DRAFT_4119 0.74 -0.3
94,968 + EX28DRAFT_4119 0.77 -0.6
94,968 + EX28DRAFT_4119 0.77 -2.5
95,058 - EX28DRAFT_4119 0.81 +0.3
95,058 - EX28DRAFT_4119 0.81 +0.3
95,148 - EX28DRAFT_4119 0.84 -3.9
95,166 - EX28DRAFT_4119 0.85 -1.8
95,217 + EX28DRAFT_4119 0.87 -0.1
95,240 - EX28DRAFT_4119 0.88 -0.7
95,277 - EX28DRAFT_4119 0.90 -2.1
95,325 - -0.5
95,340 + +0.6
95,436 + -3.9
95,436 + -1.9
95,437 - -3.4
95,437 - -0.6
95,438 + +0.4
95,439 - -1.1
95,439 - -0.9
95,450 + -1.7
95,457 + -0.3
95,457 + -0.5
95,458 - +0.3
95,507 + -0.2
95,507 + +1.4
95,507 + -0.1
95,526 + +0.3
95,527 - +0.2
95,734 + -2.5
96,016 - EX28DRAFT_4120 0.26 -3.7
96,131 - EX28DRAFT_4120 0.34 -0.2
96,131 - EX28DRAFT_4120 0.34 -3.5
96,247 - EX28DRAFT_4120 0.41 -1.6
96,261 + EX28DRAFT_4120 0.42 -3.1
96,310 - EX28DRAFT_4120 0.45 -0.2

Or see this region's nucleotide sequence