Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4082

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4081 and EX28DRAFT_4082 are separated by 452 nucleotidesEX28DRAFT_4082 and EX28DRAFT_4083 are separated by 1 nucleotidesEX28DRAFT_4083 and EX28DRAFT_4084 overlap by 4 nucleotides EX28DRAFT_4081: EX28DRAFT_4081 - Phenolic acid decarboxylase, at 55,473 to 55,979 _4081 EX28DRAFT_4082: EX28DRAFT_4082 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 56,432 to 57,571 _4082 EX28DRAFT_4083: EX28DRAFT_4083 - Glycosyltransferases involved in cell wall biogenesis, at 57,573 to 58,556 _4083 EX28DRAFT_4084: EX28DRAFT_4084 - Methionyl-tRNA formyltransferase, at 58,553 to 60,535 _4084 Position (kb) 56 57 58Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 55.473 kb on - strandat 55.473 kb on - strandat 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.530 kb on - strand, within EX28DRAFT_4081at 55.533 kb on + strand, within EX28DRAFT_4081at 55.534 kb on - strand, within EX28DRAFT_4081at 55.551 kb on + strand, within EX28DRAFT_4081at 55.577 kb on + strand, within EX28DRAFT_4081at 55.577 kb on + strand, within EX28DRAFT_4081at 55.578 kb on - strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.642 kb on - strand, within EX28DRAFT_4081at 55.642 kb on - strand, within EX28DRAFT_4081at 55.643 kb on + strand, within EX28DRAFT_4081at 55.643 kb on + strand, within EX28DRAFT_4081at 55.644 kb on - strand, within EX28DRAFT_4081at 55.644 kb on - strand, within EX28DRAFT_4081at 55.670 kb on + strand, within EX28DRAFT_4081at 55.826 kb on + strand, within EX28DRAFT_4081at 55.827 kb on - strand, within EX28DRAFT_4081at 55.827 kb on - strand, within EX28DRAFT_4081at 55.967 kb on + strandat 56.098 kb on - strandat 56.123 kb on - strandat 56.171 kb on - strandat 56.216 kb on + strandat 56.216 kb on + strandat 56.306 kb on + strandat 56.324 kb on - strandat 56.347 kb on + strandat 56.413 kb on + strandat 56.662 kb on + strand, within EX28DRAFT_4082at 56.695 kb on + strand, within EX28DRAFT_4082at 56.695 kb on + strand, within EX28DRAFT_4082at 56.695 kb on + strand, within EX28DRAFT_4082at 56.747 kb on - strand, within EX28DRAFT_4082at 56.820 kb on - strand, within EX28DRAFT_4082at 56.876 kb on - strand, within EX28DRAFT_4082at 56.919 kb on - strand, within EX28DRAFT_4082at 56.919 kb on - strand, within EX28DRAFT_4082at 56.934 kb on + strand, within EX28DRAFT_4082at 56.934 kb on + strand, within EX28DRAFT_4082at 56.980 kb on + strand, within EX28DRAFT_4082at 57.133 kb on + strand, within EX28DRAFT_4082at 57.137 kb on + strand, within EX28DRAFT_4082at 57.137 kb on + strand, within EX28DRAFT_4082at 57.138 kb on - strand, within EX28DRAFT_4082at 57.181 kb on - strand, within EX28DRAFT_4082at 57.310 kb on + strand, within EX28DRAFT_4082at 57.311 kb on - strand, within EX28DRAFT_4082at 57.311 kb on - strand, within EX28DRAFT_4082at 57.451 kb on - strand, within EX28DRAFT_4082at 57.476 kb on - strandat 57.573 kb on - strandat 57.573 kb on - strandat 57.573 kb on - strandat 57.621 kb on + strandat 57.693 kb on + strand, within EX28DRAFT_4083at 57.804 kb on + strand, within EX28DRAFT_4083at 57.804 kb on + strand, within EX28DRAFT_4083at 57.805 kb on - strand, within EX28DRAFT_4083at 57.805 kb on - strand, within EX28DRAFT_4083at 58.122 kb on - strand, within EX28DRAFT_4083at 58.207 kb on - strand, within EX28DRAFT_4083at 58.236 kb on + strand, within EX28DRAFT_4083at 58.236 kb on + strand, within EX28DRAFT_4083at 58.236 kb on + strand, within EX28DRAFT_4083at 58.236 kb on + strand, within EX28DRAFT_4083at 58.237 kb on - strand, within EX28DRAFT_4083at 58.237 kb on - strand, within EX28DRAFT_4083at 58.237 kb on - strand, within EX28DRAFT_4083at 58.237 kb on - strand, within EX28DRAFT_4083at 58.406 kb on + strand, within EX28DRAFT_4083at 58.406 kb on + strand, within EX28DRAFT_4083at 58.407 kb on - strand, within EX28DRAFT_4083at 58.452 kb on + strand, within EX28DRAFT_4083at 58.453 kb on - strand, within EX28DRAFT_4083at 58.467 kb on + strandat 58.467 kb on + strandat 58.467 kb on + strandat 58.468 kb on - strandat 58.468 kb on - strandat 58.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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55,473 - -1.4
55,473 - +0.0
55,525 + EX28DRAFT_4081 0.10 +0.6
55,525 + EX28DRAFT_4081 0.10 -0.1
55,525 + EX28DRAFT_4081 0.10 +1.2
55,525 + EX28DRAFT_4081 0.10 -0.0
55,525 + EX28DRAFT_4081 0.10 +0.1
55,525 + EX28DRAFT_4081 0.10 -0.9
55,525 + EX28DRAFT_4081 0.10 -0.9
55,526 - EX28DRAFT_4081 0.10 -0.4
55,526 - EX28DRAFT_4081 0.10 -0.7
55,526 - EX28DRAFT_4081 0.10 +2.0
55,526 - EX28DRAFT_4081 0.10 +0.1
55,526 - EX28DRAFT_4081 0.10 +0.2
55,527 + EX28DRAFT_4081 0.11 +1.3
55,527 + EX28DRAFT_4081 0.11 +0.7
55,527 + EX28DRAFT_4081 0.11 +0.6
55,528 - EX28DRAFT_4081 0.11 -0.2
55,528 - EX28DRAFT_4081 0.11 -0.3
55,528 - EX28DRAFT_4081 0.11 +1.1
55,528 - EX28DRAFT_4081 0.11 +0.3
55,529 + EX28DRAFT_4081 0.11 -0.4
55,529 + EX28DRAFT_4081 0.11 -0.8
55,529 + EX28DRAFT_4081 0.11 +0.6
55,529 + EX28DRAFT_4081 0.11 +0.3
55,530 - EX28DRAFT_4081 0.11 -0.1
55,533 + EX28DRAFT_4081 0.12 +0.0
55,534 - EX28DRAFT_4081 0.12 +0.2
55,551 + EX28DRAFT_4081 0.15 -1.5
55,577 + EX28DRAFT_4081 0.21 -0.6
55,577 + EX28DRAFT_4081 0.21 -0.4
55,578 - EX28DRAFT_4081 0.21 +0.5
55,641 + EX28DRAFT_4081 0.33 -1.3
55,641 + EX28DRAFT_4081 0.33 +0.7
55,641 + EX28DRAFT_4081 0.33 -0.5
55,642 - EX28DRAFT_4081 0.33 +0.5
55,642 - EX28DRAFT_4081 0.33 -1.9
55,643 + EX28DRAFT_4081 0.34 -3.3
55,643 + EX28DRAFT_4081 0.34 -1.1
55,644 - EX28DRAFT_4081 0.34 +0.1
55,644 - EX28DRAFT_4081 0.34 -0.0
55,670 + EX28DRAFT_4081 0.39 -0.6
55,826 + EX28DRAFT_4081 0.70 +1.0
55,827 - EX28DRAFT_4081 0.70 -0.4
55,827 - EX28DRAFT_4081 0.70 -0.2
55,967 + -0.1
56,098 - -2.0
56,123 - -3.1
56,171 - +0.3
56,216 + +0.0
56,216 + +0.3
56,306 + +0.2
56,324 - -1.2
56,347 + -0.1
56,413 + +0.3
56,662 + EX28DRAFT_4082 0.20 +1.0
56,695 + EX28DRAFT_4082 0.23 -0.8
56,695 + EX28DRAFT_4082 0.23 -0.6
56,695 + EX28DRAFT_4082 0.23 -0.2
56,747 - EX28DRAFT_4082 0.28 -0.3
56,820 - EX28DRAFT_4082 0.34 -0.7
56,876 - EX28DRAFT_4082 0.39 -0.5
56,919 - EX28DRAFT_4082 0.43 -0.3
56,919 - EX28DRAFT_4082 0.43 +0.7
56,934 + EX28DRAFT_4082 0.44 +0.0
56,934 + EX28DRAFT_4082 0.44 -1.2
56,980 + EX28DRAFT_4082 0.48 -1.9
57,133 + EX28DRAFT_4082 0.61 +1.5
57,137 + EX28DRAFT_4082 0.62 -0.4
57,137 + EX28DRAFT_4082 0.62 -1.6
57,138 - EX28DRAFT_4082 0.62 -1.1
57,181 - EX28DRAFT_4082 0.66 +0.8
57,310 + EX28DRAFT_4082 0.77 -0.0
57,311 - EX28DRAFT_4082 0.77 -0.4
57,311 - EX28DRAFT_4082 0.77 -0.2
57,451 - EX28DRAFT_4082 0.89 -2.0
57,476 - +0.6
57,573 - -1.1
57,573 - -0.7
57,573 - -0.7
57,621 + -1.1
57,693 + EX28DRAFT_4083 0.12 -0.2
57,804 + EX28DRAFT_4083 0.23 -1.0
57,804 + EX28DRAFT_4083 0.23 -0.9
57,805 - EX28DRAFT_4083 0.24 -1.1
57,805 - EX28DRAFT_4083 0.24 +0.9
58,122 - EX28DRAFT_4083 0.56 -0.9
58,207 - EX28DRAFT_4083 0.64 +0.0
58,236 + EX28DRAFT_4083 0.67 -1.0
58,236 + EX28DRAFT_4083 0.67 -2.2
58,236 + EX28DRAFT_4083 0.67 +0.0
58,236 + EX28DRAFT_4083 0.67 -1.4
58,237 - EX28DRAFT_4083 0.67 +1.2
58,237 - EX28DRAFT_4083 0.67 -3.5
58,237 - EX28DRAFT_4083 0.67 -0.3
58,237 - EX28DRAFT_4083 0.67 -1.3
58,406 + EX28DRAFT_4083 0.85 +0.4
58,406 + EX28DRAFT_4083 0.85 -1.8
58,407 - EX28DRAFT_4083 0.85 -0.6
58,452 + EX28DRAFT_4083 0.89 +0.2
58,453 - EX28DRAFT_4083 0.89 +0.5
58,467 + -4.5
58,467 + +0.6
58,467 + -0.8
58,468 - -1.0
58,468 - -3.9
58,500 - -0.9

Or see this region's nucleotide sequence