Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4053

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4052 and EX28DRAFT_4053 are separated by 65 nucleotidesEX28DRAFT_4053 and EX28DRAFT_4054 are separated by 60 nucleotides EX28DRAFT_4052: EX28DRAFT_4052 - FOG: EAL domain, at 24,148 to 24,921 _4052 EX28DRAFT_4053: EX28DRAFT_4053 - Uncharacterized protein involved in outer membrane biogenesis, at 24,987 to 27,029 _4053 EX28DRAFT_4054: EX28DRAFT_4054 - metabolite-proton symporter, at 27,090 to 28,412 _4054 Position (kb) 24 25 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 24.046 kb on + strandat 24.074 kb on + strandat 24.075 kb on - strandat 24.198 kb on + strandat 24.198 kb on + strandat 24.247 kb on + strand, within EX28DRAFT_4052at 24.248 kb on - strand, within EX28DRAFT_4052at 24.253 kb on + strand, within EX28DRAFT_4052at 24.254 kb on - strand, within EX28DRAFT_4052at 24.265 kb on + strand, within EX28DRAFT_4052at 24.355 kb on + strand, within EX28DRAFT_4052at 24.411 kb on + strand, within EX28DRAFT_4052at 24.411 kb on + strand, within EX28DRAFT_4052at 24.412 kb on - strand, within EX28DRAFT_4052at 24.412 kb on - strand, within EX28DRAFT_4052at 24.682 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.688 kb on - strand, within EX28DRAFT_4052at 24.712 kb on - strand, within EX28DRAFT_4052at 24.712 kb on - strand, within EX28DRAFT_4052at 24.712 kb on - strand, within EX28DRAFT_4052at 24.758 kb on + strand, within EX28DRAFT_4052at 24.759 kb on - strand, within EX28DRAFT_4052at 24.759 kb on - strand, within EX28DRAFT_4052at 24.862 kb on + strandat 24.862 kb on + strandat 24.863 kb on - strandat 24.865 kb on + strandat 24.866 kb on - strandat 24.906 kb on + strandat 24.907 kb on - strandat 24.908 kb on + strandat 24.949 kb on + strandat 24.949 kb on + strandat 24.955 kb on + strandat 25.061 kb on + strandat 25.061 kb on + strandat 25.062 kb on - strandat 25.154 kb on - strandat 25.482 kb on - strand, within EX28DRAFT_4053at 25.621 kb on + strand, within EX28DRAFT_4053at 25.621 kb on + strand, within EX28DRAFT_4053at 25.621 kb on + strand, within EX28DRAFT_4053at 25.622 kb on - strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.630 kb on - strand, within EX28DRAFT_4053at 25.630 kb on - strand, within EX28DRAFT_4053at 25.630 kb on - strand, within EX28DRAFT_4053at 25.860 kb on + strand, within EX28DRAFT_4053at 26.013 kb on + strand, within EX28DRAFT_4053at 26.014 kb on - strand, within EX28DRAFT_4053at 26.117 kb on + strand, within EX28DRAFT_4053at 26.252 kb on + strand, within EX28DRAFT_4053at 26.447 kb on - strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.620 kb on - strand, within EX28DRAFT_4053at 26.622 kb on - strand, within EX28DRAFT_4053at 26.714 kb on - strand, within EX28DRAFT_4053at 26.714 kb on - strand, within EX28DRAFT_4053at 26.845 kb on - strandat 26.845 kb on - strandat 27.005 kb on + strandat 27.028 kb on - strandat 27.028 kb on - strandat 27.092 kb on - strandat 27.163 kb on + strandat 27.176 kb on - strandat 27.187 kb on + strandat 27.188 kb on - strandat 27.214 kb on + strandat 27.214 kb on + strandat 27.214 kb on + strandat 27.384 kb on - strand, within EX28DRAFT_4054at 27.551 kb on + strand, within EX28DRAFT_4054at 27.599 kb on + strand, within EX28DRAFT_4054at 27.605 kb on - strand, within EX28DRAFT_4054at 27.619 kb on + strand, within EX28DRAFT_4054at 27.619 kb on + strand, within EX28DRAFT_4054at 27.620 kb on - strand, within EX28DRAFT_4054at 27.620 kb on - strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.772 kb on + strand, within EX28DRAFT_4054at 27.806 kb on + strand, within EX28DRAFT_4054

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
24,046 + -1.8
24,074 + -3.3
24,075 - +1.2
24,198 + -0.3
24,198 + +0.1
24,247 + EX28DRAFT_4052 0.13 -1.2
24,248 - EX28DRAFT_4052 0.13 -0.0
24,253 + EX28DRAFT_4052 0.14 +0.6
24,254 - EX28DRAFT_4052 0.14 +0.5
24,265 + EX28DRAFT_4052 0.15 +0.7
24,355 + EX28DRAFT_4052 0.27 +1.4
24,411 + EX28DRAFT_4052 0.34 +0.1
24,411 + EX28DRAFT_4052 0.34 -3.7
24,412 - EX28DRAFT_4052 0.34 +0.2
24,412 - EX28DRAFT_4052 0.34 +0.2
24,682 + EX28DRAFT_4052 0.69 -0.7
24,687 + EX28DRAFT_4052 0.70 -0.4
24,687 + EX28DRAFT_4052 0.70 +0.2
24,687 + EX28DRAFT_4052 0.70 +0.1
24,687 + EX28DRAFT_4052 0.70 +0.4
24,688 - EX28DRAFT_4052 0.70 -0.0
24,712 - EX28DRAFT_4052 0.73 -0.9
24,712 - EX28DRAFT_4052 0.73 +0.1
24,712 - EX28DRAFT_4052 0.73 +2.3
24,758 + EX28DRAFT_4052 0.79 -1.0
24,759 - EX28DRAFT_4052 0.79 +1.5
24,759 - EX28DRAFT_4052 0.79 -0.6
24,862 + -0.4
24,862 + -0.4
24,863 - +0.8
24,865 + +0.2
24,866 - -0.4
24,906 + -0.6
24,907 - -0.4
24,908 + -0.6
24,949 + +0.5
24,949 + -1.2
24,955 + +0.6
25,061 + -0.1
25,061 + -0.4
25,062 - -1.1
25,154 - -0.1
25,482 - EX28DRAFT_4053 0.24 +0.6
25,621 + EX28DRAFT_4053 0.31 +0.5
25,621 + EX28DRAFT_4053 0.31 +0.6
25,621 + EX28DRAFT_4053 0.31 +0.3
25,622 - EX28DRAFT_4053 0.31 -0.5
25,629 + EX28DRAFT_4053 0.31 -3.3
25,629 + EX28DRAFT_4053 0.31 +0.0
25,629 + EX28DRAFT_4053 0.31 -3.2
25,629 + EX28DRAFT_4053 0.31 -0.1
25,630 - EX28DRAFT_4053 0.31 +0.1
25,630 - EX28DRAFT_4053 0.31 -0.1
25,630 - EX28DRAFT_4053 0.31 +0.7
25,860 + EX28DRAFT_4053 0.43 -2.0
26,013 + EX28DRAFT_4053 0.50 -0.2
26,014 - EX28DRAFT_4053 0.50 -0.1
26,117 + EX28DRAFT_4053 0.55 -0.4
26,252 + EX28DRAFT_4053 0.62 +0.2
26,447 - EX28DRAFT_4053 0.71 +0.2
26,619 + EX28DRAFT_4053 0.80 -0.8
26,619 + EX28DRAFT_4053 0.80 -0.4
26,619 + EX28DRAFT_4053 0.80 -3.0
26,619 + EX28DRAFT_4053 0.80 -2.0
26,620 - EX28DRAFT_4053 0.80 +0.3
26,622 - EX28DRAFT_4053 0.80 -4.3
26,714 - EX28DRAFT_4053 0.85 -1.5
26,714 - EX28DRAFT_4053 0.85 +0.8
26,845 - -0.6
26,845 - +0.2
27,005 + +0.6
27,028 - +0.7
27,028 - -1.0
27,092 - +0.6
27,163 + -2.6
27,176 - +0.4
27,187 + -0.7
27,188 - -0.3
27,214 + +0.0
27,214 + -0.2
27,214 + -0.1
27,384 - EX28DRAFT_4054 0.22 +0.5
27,551 + EX28DRAFT_4054 0.35 +0.9
27,599 + EX28DRAFT_4054 0.38 +0.4
27,605 - EX28DRAFT_4054 0.39 -0.3
27,619 + EX28DRAFT_4054 0.40 +1.5
27,619 + EX28DRAFT_4054 0.40 -0.2
27,620 - EX28DRAFT_4054 0.40 -0.9
27,620 - EX28DRAFT_4054 0.40 -1.1
27,631 + EX28DRAFT_4054 0.41 -0.2
27,631 + EX28DRAFT_4054 0.41 +0.3
27,631 + EX28DRAFT_4054 0.41 -1.1
27,632 - EX28DRAFT_4054 0.41 +0.7
27,632 - EX28DRAFT_4054 0.41 +0.9
27,632 - EX28DRAFT_4054 0.41 +0.1
27,772 + EX28DRAFT_4054 0.52 +0.0
27,806 + EX28DRAFT_4054 0.54 +0.7

Or see this region's nucleotide sequence