Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4025

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4023 and EX28DRAFT_4024 are separated by 197 nucleotidesEX28DRAFT_4024 and EX28DRAFT_4025 are separated by 7 nucleotidesEX28DRAFT_4025 and EX28DRAFT_4026 are separated by 4 nucleotidesEX28DRAFT_4026 and EX28DRAFT_4027 are separated by 27 nucleotides EX28DRAFT_4023: EX28DRAFT_4023 - potassium uptake protein, at 233,986 to 235,854 _4023 EX28DRAFT_4024: EX28DRAFT_4024 - ABC-type ribose transport system, auxiliary component, at 236,052 to 236,471 _4024 EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984 _4025 EX28DRAFT_4026: EX28DRAFT_4026 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 237,989 to 238,954 _4026 EX28DRAFT_4027: EX28DRAFT_4027 - ABC-type sugar transport system, periplasmic component, at 238,982 to 239,872 _4027 Position (kb) 236 237 238Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 235.534 kb on + strand, within EX28DRAFT_4023at 235.535 kb on - strand, within EX28DRAFT_4023at 235.696 kb on - strandat 235.736 kb on - strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.852 kb on + strandat 235.853 kb on - strandat 235.921 kb on + strandat 235.922 kb on - strandat 236.213 kb on - strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.280 kb on - strand, within EX28DRAFT_4024at 236.312 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.348 kb on - strand, within EX28DRAFT_4024at 236.441 kb on + strandat 236.511 kb on + strandat 236.512 kb on - strandat 236.638 kb on + strand, within EX28DRAFT_4025at 236.639 kb on - strand, within EX28DRAFT_4025at 236.728 kb on - strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.877 kb on + strand, within EX28DRAFT_4025at 236.877 kb on + strand, within EX28DRAFT_4025at 237.064 kb on + strand, within EX28DRAFT_4025at 237.064 kb on + strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.135 kb on + strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025at 237.550 kb on + strand, within EX28DRAFT_4025at 237.582 kb on + strand, within EX28DRAFT_4025at 237.583 kb on - strand, within EX28DRAFT_4025at 237.781 kb on + strand, within EX28DRAFT_4025at 237.782 kb on - strand, within EX28DRAFT_4025at 237.784 kb on - strand, within EX28DRAFT_4025at 237.851 kb on + strandat 237.854 kb on + strandat 237.854 kb on + strandat 237.855 kb on - strandat 237.982 kb on + strandat 237.983 kb on - strandat 237.983 kb on - strandat 237.994 kb on + strandat 238.020 kb on - strandat 238.020 kb on - strandat 238.121 kb on - strand, within EX28DRAFT_4026at 238.121 kb on - strand, within EX28DRAFT_4026at 238.528 kb on + strand, within EX28DRAFT_4026at 238.529 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.580 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.586 kb on + strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.652 kb on - strand, within EX28DRAFT_4026at 238.658 kb on + strand, within EX28DRAFT_4026at 238.659 kb on - strand, within EX28DRAFT_4026at 238.745 kb on + strand, within EX28DRAFT_4026at 238.873 kb on - strandat 238.886 kb on + strandat 238.935 kb on + strandat 238.965 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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235,534 + EX28DRAFT_4023 0.83 -0.4
235,535 - EX28DRAFT_4023 0.83 -2.3
235,696 - -3.1
235,736 - +1.5
235,759 + +0.0
235,759 + -4.2
235,759 + -0.5
235,852 + +0.1
235,853 - +0.3
235,921 + -1.8
235,922 - +1.2
236,213 - EX28DRAFT_4024 0.38 +1.4
236,279 + EX28DRAFT_4024 0.54 -0.4
236,279 + EX28DRAFT_4024 0.54 -0.1
236,280 - EX28DRAFT_4024 0.54 -0.5
236,312 + EX28DRAFT_4024 0.62 +0.6
236,347 + EX28DRAFT_4024 0.70 -0.2
236,347 + EX28DRAFT_4024 0.70 -0.2
236,348 - EX28DRAFT_4024 0.70 +0.2
236,441 + -1.9
236,511 + +0.5
236,512 - -2.2
236,638 + EX28DRAFT_4025 0.11 -0.1
236,639 - EX28DRAFT_4025 0.11 -0.6
236,728 - EX28DRAFT_4025 0.17 +0.3
236,833 + EX28DRAFT_4025 0.24 -0.7
236,833 + EX28DRAFT_4025 0.24 +0.0
236,834 - EX28DRAFT_4025 0.24 +1.0
236,834 - EX28DRAFT_4025 0.24 +0.8
236,834 - EX28DRAFT_4025 0.24 -0.1
236,877 + EX28DRAFT_4025 0.26 -0.5
236,877 + EX28DRAFT_4025 0.26 -1.2
237,064 + EX28DRAFT_4025 0.39 +1.4
237,064 + EX28DRAFT_4025 0.39 -0.1
237,065 - EX28DRAFT_4025 0.39 +0.7
237,065 - EX28DRAFT_4025 0.39 -0.3
237,065 - EX28DRAFT_4025 0.39 +3.1
237,135 + EX28DRAFT_4025 0.44 +0.0
237,172 - EX28DRAFT_4025 0.46 +0.7
237,172 - EX28DRAFT_4025 0.46 +1.3
237,172 - EX28DRAFT_4025 0.46 +1.0
237,469 + EX28DRAFT_4025 0.66 -1.1
237,469 + EX28DRAFT_4025 0.66 -2.4
237,469 + EX28DRAFT_4025 0.66 -1.2
237,469 + EX28DRAFT_4025 0.66 -1.6
237,470 - EX28DRAFT_4025 0.66 +0.8
237,470 - EX28DRAFT_4025 0.66 +0.1
237,550 + EX28DRAFT_4025 0.71 -4.8
237,582 + EX28DRAFT_4025 0.73 -1.2
237,583 - EX28DRAFT_4025 0.73 +0.4
237,781 + EX28DRAFT_4025 0.86 -2.6
237,782 - EX28DRAFT_4025 0.87 -4.3
237,784 - EX28DRAFT_4025 0.87 +0.3
237,851 + -1.4
237,854 + -1.5
237,854 + -0.3
237,855 - +5.0
237,982 + -4.8
237,983 - +0.7
237,983 - -0.2
237,994 + +0.6
238,020 - +0.0
238,020 - +0.6
238,121 - EX28DRAFT_4026 0.14 +0.6
238,121 - EX28DRAFT_4026 0.14 +0.8
238,528 + EX28DRAFT_4026 0.56 -0.8
238,529 - EX28DRAFT_4026 0.56 -0.2
238,551 - EX28DRAFT_4026 0.58 +0.4
238,551 - EX28DRAFT_4026 0.58 +0.6
238,551 - EX28DRAFT_4026 0.58 +1.1
238,551 - EX28DRAFT_4026 0.58 +0.6
238,580 + EX28DRAFT_4026 0.61 -1.0
238,582 + EX28DRAFT_4026 0.61 -3.8
238,582 + EX28DRAFT_4026 0.61 +0.0
238,582 + EX28DRAFT_4026 0.61 -1.6
238,582 + EX28DRAFT_4026 0.61 -2.4
238,583 - EX28DRAFT_4026 0.61 +0.7
238,583 - EX28DRAFT_4026 0.61 +0.9
238,583 - EX28DRAFT_4026 0.61 -0.1
238,583 - EX28DRAFT_4026 0.61 +0.6
238,583 - EX28DRAFT_4026 0.61 -0.1
238,586 + EX28DRAFT_4026 0.62 +0.1
238,587 - EX28DRAFT_4026 0.62 -0.4
238,587 - EX28DRAFT_4026 0.62 -3.8
238,587 - EX28DRAFT_4026 0.62 -0.1
238,640 - EX28DRAFT_4026 0.67 -1.2
238,640 - EX28DRAFT_4026 0.67 +0.0
238,640 - EX28DRAFT_4026 0.67 +0.4
238,652 - EX28DRAFT_4026 0.69 -0.1
238,658 + EX28DRAFT_4026 0.69 -1.6
238,659 - EX28DRAFT_4026 0.69 -0.5
238,745 + EX28DRAFT_4026 0.78 -4.3
238,873 - -1.5
238,886 + -3.7
238,935 + -1.6
238,965 + -2.0
238,977 + -1.2
238,977 + -0.8
238,977 + +1.1
238,977 + -1.2
238,977 + -0.9
238,977 + -3.9
238,977 + -0.9
238,978 - +0.4
238,978 - +0.1
238,978 - +0.6
238,978 - +0.3

Or see this region's nucleotide sequence