Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3928 and EX28DRAFT_3929 are separated by 26 nucleotides EX28DRAFT_3929 and EX28DRAFT_3930 are separated by 122 nucleotides
EX28DRAFT_3928: EX28DRAFT_3928 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 136,799 to 137,752
_3928
EX28DRAFT_3929: EX28DRAFT_3929 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 137,779 to 138,558
_3929
EX28DRAFT_3930: EX28DRAFT_3930 - lipoprotein, YaeC family, at 138,681 to 139,481
_3930
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 136.785 kb on - strand at 136.800 kb on + strand at 136.801 kb on - strand at 136.801 kb on - strand at 137.006 kb on - strand, within EX28DRAFT_3928 at 137.068 kb on + strand, within EX28DRAFT_3928 at 137.069 kb on - strand, within EX28DRAFT_3928 at 137.097 kb on + strand, within EX28DRAFT_3928 at 137.113 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.251 kb on - strand, within EX28DRAFT_3928 at 137.296 kb on + strand, within EX28DRAFT_3928 at 137.297 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.323 kb on + strand, within EX28DRAFT_3928 at 137.415 kb on + strand, within EX28DRAFT_3928 at 137.697 kb on + strand at 137.785 kb on + strand at 137.787 kb on + strand at 137.788 kb on - strand at 137.847 kb on - strand at 137.847 kb on - strand at 137.962 kb on - strand, within EX28DRAFT_3929 at 138.081 kb on - strand, within EX28DRAFT_3929 at 138.440 kb on + strand, within EX28DRAFT_3929 at 138.496 kb on + strand at 138.497 kb on - strand at 138.497 kb on - strand at 138.519 kb on + strand at 138.520 kb on - strand at 138.558 kb on + strand at 138.818 kb on - strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.887 kb on + strand, within EX28DRAFT_3930 at 138.887 kb on + strand, within EX28DRAFT_3930 at 138.888 kb on - strand, within EX28DRAFT_3930 at 138.888 kb on - strand, within EX28DRAFT_3930 at 138.990 kb on - strand, within EX28DRAFT_3930 at 139.195 kb on + strand, within EX28DRAFT_3930 at 139.195 kb on + strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.328 kb on - strand, within EX28DRAFT_3930 at 139.328 kb on - strand, within EX28DRAFT_3930 at 139.397 kb on + strand, within EX28DRAFT_3930 at 139.455 kb on + strand at 139.508 kb on + strand at 139.516 kb on - strand at 139.516 kb on - strand at 139.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 136,785 - +0.2 136,800 + -0.6 136,801 - +0.7 136,801 - +0.2 137,006 - EX28DRAFT_3928 0.22 -0.1 137,068 + EX28DRAFT_3928 0.28 -0.5 137,069 - EX28DRAFT_3928 0.28 -0.3 137,097 + EX28DRAFT_3928 0.31 -0.6 137,113 + EX28DRAFT_3928 0.33 +0.9 137,137 + EX28DRAFT_3928 0.35 -0.3 137,137 + EX28DRAFT_3928 0.35 +1.0 137,137 + EX28DRAFT_3928 0.35 +0.8 137,137 + EX28DRAFT_3928 0.35 -0.7 137,249 - EX28DRAFT_3928 0.47 +0.9 137,249 - EX28DRAFT_3928 0.47 +1.0 137,250 + EX28DRAFT_3928 0.47 -0.3 137,250 + EX28DRAFT_3928 0.47 -0.0 137,250 + EX28DRAFT_3928 0.47 +0.2 137,250 + EX28DRAFT_3928 0.47 -0.4 137,251 - EX28DRAFT_3928 0.47 +0.4 137,296 + EX28DRAFT_3928 0.52 +1.4 137,297 - EX28DRAFT_3928 0.52 +0.3 137,314 - EX28DRAFT_3928 0.54 -1.2 137,314 - EX28DRAFT_3928 0.54 -0.3 137,323 + EX28DRAFT_3928 0.55 -0.4 137,415 + EX28DRAFT_3928 0.65 -0.1 137,697 + -0.4 137,785 + -2.8 137,787 + -1.2 137,788 - -0.0 137,847 - +0.4 137,847 - -0.3 137,962 - EX28DRAFT_3929 0.23 -0.5 138,081 - EX28DRAFT_3929 0.39 +0.4 138,440 + EX28DRAFT_3929 0.85 +0.9 138,496 + +1.5 138,497 - -1.1 138,497 - -2.0 138,519 + -0.8 138,520 - +0.1 138,558 + +0.2 138,818 - EX28DRAFT_3930 0.17 -3.7 138,883 + EX28DRAFT_3930 0.25 +0.6 138,883 + EX28DRAFT_3930 0.25 -0.6 138,883 + EX28DRAFT_3930 0.25 +0.0 138,883 + EX28DRAFT_3930 0.25 -0.0 138,884 - EX28DRAFT_3930 0.25 +0.3 138,884 - EX28DRAFT_3930 0.25 -0.3 138,884 - EX28DRAFT_3930 0.25 -3.3 138,884 - EX28DRAFT_3930 0.25 +0.7 138,884 - EX28DRAFT_3930 0.25 +1.6 138,884 - EX28DRAFT_3930 0.25 -0.2 138,884 - EX28DRAFT_3930 0.25 -0.1 138,884 - EX28DRAFT_3930 0.25 +0.2 138,887 + EX28DRAFT_3930 0.26 +0.2 138,887 + EX28DRAFT_3930 0.26 -2.0 138,888 - EX28DRAFT_3930 0.26 -0.4 138,888 - EX28DRAFT_3930 0.26 +0.8 138,990 - EX28DRAFT_3930 0.39 +0.6 139,195 + EX28DRAFT_3930 0.64 +0.6 139,195 + EX28DRAFT_3930 0.64 -1.9 139,196 - EX28DRAFT_3930 0.64 +0.8 139,196 - EX28DRAFT_3930 0.64 +0.0 139,196 - EX28DRAFT_3930 0.64 -0.8 139,328 - EX28DRAFT_3930 0.81 -1.0 139,328 - EX28DRAFT_3930 0.81 -3.0 139,397 + EX28DRAFT_3930 0.89 -1.1 139,455 + -2.2 139,508 + -3.0 139,516 - -0.3 139,516 - -0.5 139,518 - -2.1
Or see this region's nucleotide sequence