Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3926 and EX28DRAFT_3927 are separated by 21 nucleotides EX28DRAFT_3927 and EX28DRAFT_3928 are separated by 112 nucleotides
EX28DRAFT_3926: EX28DRAFT_3926 - Predicted ATPase, at 135,328 to 136,416
_3926
EX28DRAFT_3927: EX28DRAFT_3927 - hypothetical protein, at 136,438 to 136,686
_3927
EX28DRAFT_3928: EX28DRAFT_3928 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 136,799 to 137,752
_3928
Position (kb) 136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.439 kb on + strand, within EX28DRAFT_3926 at 135.439 kb on + strand, within EX28DRAFT_3926 at 135.439 kb on + strand, within EX28DRAFT_3926 at 135.440 kb on - strand, within EX28DRAFT_3926 at 135.589 kb on + strand, within EX28DRAFT_3926 at 135.596 kb on - strand, within EX28DRAFT_3926 at 135.602 kb on + strand, within EX28DRAFT_3926 at 135.602 kb on + strand, within EX28DRAFT_3926 at 135.603 kb on - strand, within EX28DRAFT_3926 at 135.603 kb on - strand, within EX28DRAFT_3926 at 135.726 kb on + strand, within EX28DRAFT_3926 at 135.727 kb on - strand, within EX28DRAFT_3926 at 135.791 kb on - strand, within EX28DRAFT_3926 at 135.806 kb on + strand, within EX28DRAFT_3926 at 135.871 kb on - strand, within EX28DRAFT_3926 at 135.883 kb on + strand, within EX28DRAFT_3926 at 136.366 kb on + strand at 136.415 kb on - strand at 136.489 kb on + strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.530 kb on + strand, within EX28DRAFT_3927 at 136.531 kb on - strand, within EX28DRAFT_3927 at 136.655 kb on - strand, within EX28DRAFT_3927 at 136.663 kb on + strand at 136.664 kb on - strand at 136.677 kb on + strand at 136.677 kb on + strand at 136.677 kb on + strand at 136.678 kb on - strand at 136.678 kb on - strand at 136.680 kb on + strand at 136.681 kb on - strand at 136.687 kb on + strand at 136.736 kb on + strand at 136.740 kb on + strand at 136.740 kb on + strand at 136.740 kb on + strand at 136.741 kb on - strand at 136.745 kb on + strand at 136.745 kb on + strand at 136.746 kb on - strand at 136.785 kb on - strand at 136.800 kb on + strand at 136.801 kb on - strand at 136.801 kb on - strand at 137.006 kb on - strand, within EX28DRAFT_3928 at 137.068 kb on + strand, within EX28DRAFT_3928 at 137.069 kb on - strand, within EX28DRAFT_3928 at 137.097 kb on + strand, within EX28DRAFT_3928 at 137.113 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.251 kb on - strand, within EX28DRAFT_3928 at 137.296 kb on + strand, within EX28DRAFT_3928 at 137.297 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.323 kb on + strand, within EX28DRAFT_3928 at 137.415 kb on + strand, within EX28DRAFT_3928
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 135,439 + EX28DRAFT_3926 0.10 -0.6 135,439 + EX28DRAFT_3926 0.10 -3.4 135,439 + EX28DRAFT_3926 0.10 +1.8 135,440 - EX28DRAFT_3926 0.10 +0.2 135,589 + EX28DRAFT_3926 0.24 -1.1 135,596 - EX28DRAFT_3926 0.25 -0.3 135,602 + EX28DRAFT_3926 0.25 +0.5 135,602 + EX28DRAFT_3926 0.25 -0.0 135,603 - EX28DRAFT_3926 0.25 +0.5 135,603 - EX28DRAFT_3926 0.25 -1.0 135,726 + EX28DRAFT_3926 0.37 -0.9 135,727 - EX28DRAFT_3926 0.37 +0.3 135,791 - EX28DRAFT_3926 0.43 -0.2 135,806 + EX28DRAFT_3926 0.44 -0.1 135,871 - EX28DRAFT_3926 0.50 -1.9 135,883 + EX28DRAFT_3926 0.51 +0.0 136,366 + +0.4 136,415 - +0.3 136,489 + EX28DRAFT_3927 0.20 +0.1 136,490 - EX28DRAFT_3927 0.21 -1.3 136,490 - EX28DRAFT_3927 0.21 +0.8 136,490 - EX28DRAFT_3927 0.21 -0.3 136,530 + EX28DRAFT_3927 0.37 -1.7 136,531 - EX28DRAFT_3927 0.37 +0.9 136,655 - EX28DRAFT_3927 0.87 -0.2 136,663 + +0.2 136,664 - -2.5 136,677 + -0.7 136,677 + -2.3 136,677 + -0.6 136,678 - -0.3 136,678 - -2.4 136,680 + -1.7 136,681 - +0.4 136,687 + +0.8 136,736 + +0.7 136,740 + -0.1 136,740 + +0.1 136,740 + +0.0 136,741 - +1.2 136,745 + -0.1 136,745 + +0.1 136,746 - +0.1 136,785 - +0.2 136,800 + -0.6 136,801 - +0.7 136,801 - +0.2 137,006 - EX28DRAFT_3928 0.22 -0.1 137,068 + EX28DRAFT_3928 0.28 -0.5 137,069 - EX28DRAFT_3928 0.28 -0.3 137,097 + EX28DRAFT_3928 0.31 -0.6 137,113 + EX28DRAFT_3928 0.33 +0.9 137,137 + EX28DRAFT_3928 0.35 -0.3 137,137 + EX28DRAFT_3928 0.35 +1.0 137,137 + EX28DRAFT_3928 0.35 +0.8 137,137 + EX28DRAFT_3928 0.35 -0.7 137,249 - EX28DRAFT_3928 0.47 +0.9 137,249 - EX28DRAFT_3928 0.47 +1.0 137,250 + EX28DRAFT_3928 0.47 -0.3 137,250 + EX28DRAFT_3928 0.47 -0.0 137,250 + EX28DRAFT_3928 0.47 +0.2 137,250 + EX28DRAFT_3928 0.47 -0.4 137,251 - EX28DRAFT_3928 0.47 +0.4 137,296 + EX28DRAFT_3928 0.52 +1.4 137,297 - EX28DRAFT_3928 0.52 +0.3 137,314 - EX28DRAFT_3928 0.54 -1.2 137,314 - EX28DRAFT_3928 0.54 -0.3 137,323 + EX28DRAFT_3928 0.55 -0.4 137,415 + EX28DRAFT_3928 0.65 -0.1
Or see this region's nucleotide sequence