Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3855 and EX28DRAFT_3856 are separated by 181 nucleotides EX28DRAFT_3856 and EX28DRAFT_3857 are separated by 45 nucleotides EX28DRAFT_3857 and EX28DRAFT_3858 overlap by 4 nucleotides
EX28DRAFT_3855: EX28DRAFT_3855 - L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases, at 65,007 to 66,194
_3855
EX28DRAFT_3856: EX28DRAFT_3856 - Arabinose efflux permease, at 66,376 to 67,716
_3856
EX28DRAFT_3857: EX28DRAFT_3857 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 67,762 to 68,235
_3857
EX28DRAFT_3858: EX28DRAFT_3858 - serine O-acetyltransferase, at 68,232 to 69,053
_3858
Position (kb) 66
67
68 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 65.392 kb on - strand, within EX28DRAFT_3855 at 65.415 kb on - strand, within EX28DRAFT_3855 at 65.664 kb on + strand, within EX28DRAFT_3855 at 65.665 kb on - strand, within EX28DRAFT_3855 at 65.957 kb on + strand, within EX28DRAFT_3855 at 65.958 kb on - strand, within EX28DRAFT_3855 at 65.983 kb on + strand, within EX28DRAFT_3855 at 65.984 kb on - strand, within EX28DRAFT_3855 at 66.000 kb on + strand, within EX28DRAFT_3855 at 66.001 kb on - strand, within EX28DRAFT_3855 at 66.001 kb on - strand, within EX28DRAFT_3855 at 66.120 kb on - strand at 66.142 kb on + strand at 66.274 kb on + strand at 66.323 kb on - strand at 66.323 kb on - strand at 66.375 kb on + strand at 66.376 kb on - strand at 66.382 kb on + strand at 66.508 kb on + strand at 66.829 kb on - strand, within EX28DRAFT_3856 at 66.829 kb on - strand, within EX28DRAFT_3856 at 66.829 kb on - strand, within EX28DRAFT_3856 at 66.835 kb on + strand, within EX28DRAFT_3856 at 66.835 kb on + strand, within EX28DRAFT_3856 at 66.835 kb on + strand, within EX28DRAFT_3856 at 66.835 kb on + strand, within EX28DRAFT_3856 at 66.889 kb on - strand, within EX28DRAFT_3856 at 66.947 kb on + strand, within EX28DRAFT_3856 at 67.175 kb on - strand, within EX28DRAFT_3856 at 67.180 kb on - strand, within EX28DRAFT_3856 at 67.195 kb on + strand, within EX28DRAFT_3856 at 67.196 kb on - strand, within EX28DRAFT_3856 at 67.198 kb on + strand, within EX28DRAFT_3856 at 67.198 kb on + strand, within EX28DRAFT_3856 at 67.198 kb on + strand, within EX28DRAFT_3856 at 67.199 kb on - strand, within EX28DRAFT_3856 at 67.208 kb on + strand, within EX28DRAFT_3856 at 67.408 kb on - strand, within EX28DRAFT_3856 at 67.684 kb on + strand at 67.685 kb on - strand at 67.714 kb on + strand at 67.714 kb on + strand at 67.715 kb on - strand at 67.715 kb on - strand at 67.751 kb on - strand at 67.812 kb on + strand, within EX28DRAFT_3857 at 67.813 kb on - strand, within EX28DRAFT_3857 at 67.872 kb on + strand, within EX28DRAFT_3857 at 67.873 kb on - strand, within EX28DRAFT_3857 at 68.019 kb on + strand, within EX28DRAFT_3857 at 68.047 kb on + strand, within EX28DRAFT_3857 at 68.047 kb on + strand, within EX28DRAFT_3857 at 68.048 kb on - strand, within EX28DRAFT_3857 at 68.186 kb on - strand, within EX28DRAFT_3857 at 68.186 kb on - strand, within EX28DRAFT_3857 at 68.186 kb on - strand, within EX28DRAFT_3857 at 68.233 kb on + strand at 68.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 65,392 - EX28DRAFT_3855 0.32 -0.2 65,415 - EX28DRAFT_3855 0.34 -0.6 65,664 + EX28DRAFT_3855 0.55 -0.5 65,665 - EX28DRAFT_3855 0.55 -1.1 65,957 + EX28DRAFT_3855 0.80 +0.4 65,958 - EX28DRAFT_3855 0.80 -0.4 65,983 + EX28DRAFT_3855 0.82 +0.2 65,984 - EX28DRAFT_3855 0.82 +0.2 66,000 + EX28DRAFT_3855 0.84 +0.4 66,001 - EX28DRAFT_3855 0.84 +0.0 66,001 - EX28DRAFT_3855 0.84 -1.1 66,120 - +0.5 66,142 + +0.6 66,274 + -0.1 66,323 - +0.6 66,323 - +0.3 66,375 + +0.0 66,376 - +0.1 66,382 + +0.1 66,508 + -0.3 66,829 - EX28DRAFT_3856 0.34 +0.3 66,829 - EX28DRAFT_3856 0.34 +0.6 66,829 - EX28DRAFT_3856 0.34 -0.1 66,835 + EX28DRAFT_3856 0.34 +0.6 66,835 + EX28DRAFT_3856 0.34 -0.8 66,835 + EX28DRAFT_3856 0.34 +0.2 66,835 + EX28DRAFT_3856 0.34 +0.4 66,889 - EX28DRAFT_3856 0.38 +0.4 66,947 + EX28DRAFT_3856 0.43 +0.2 67,175 - EX28DRAFT_3856 0.60 -0.4 67,180 - EX28DRAFT_3856 0.60 +0.2 67,195 + EX28DRAFT_3856 0.61 +0.0 67,196 - EX28DRAFT_3856 0.61 -0.6 67,198 + EX28DRAFT_3856 0.61 -0.0 67,198 + EX28DRAFT_3856 0.61 +0.1 67,198 + EX28DRAFT_3856 0.61 +0.4 67,199 - EX28DRAFT_3856 0.61 +0.5 67,208 + EX28DRAFT_3856 0.62 +1.1 67,408 - EX28DRAFT_3856 0.77 -0.8 67,684 + -0.2 67,685 - +0.4 67,714 + +2.0 67,714 + -0.2 67,715 - +0.2 67,715 - -0.1 67,751 - -1.3 67,812 + EX28DRAFT_3857 0.11 +0.3 67,813 - EX28DRAFT_3857 0.11 -0.9 67,872 + EX28DRAFT_3857 0.23 +0.2 67,873 - EX28DRAFT_3857 0.23 +0.1 68,019 + EX28DRAFT_3857 0.54 -3.7 68,047 + EX28DRAFT_3857 0.60 -5.0 68,047 + EX28DRAFT_3857 0.60 -1.1 68,048 - EX28DRAFT_3857 0.60 -0.2 68,186 - EX28DRAFT_3857 0.89 -0.3 68,186 - EX28DRAFT_3857 0.89 -1.6 68,186 - EX28DRAFT_3857 0.89 -0.6 68,233 + +0.4 68,259 - +1.1
Or see this region's nucleotide sequence