Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3836

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3835 and EX28DRAFT_3836 are separated by 314 nucleotidesEX28DRAFT_3836 and EX28DRAFT_3837 are separated by 240 nucleotides EX28DRAFT_3835: EX28DRAFT_3835 - Uncharacterized FlgJ-related protein, at 41,060 to 41,884 _3835 EX28DRAFT_3836: EX28DRAFT_3836 - Glycosidases, at 42,199 to 44,229 _3836 EX28DRAFT_3837: EX28DRAFT_3837 - valine-pyruvate aminotransferase apoenzyme (EC 2.6.1.66), at 44,470 to 45,726 _3837 Position (kb) 42 43 44 45Strain fitness (log2 ratio) -2 -1 0 1at 41.253 kb on - strand, within EX28DRAFT_3835at 41.324 kb on - strand, within EX28DRAFT_3835at 41.324 kb on - strand, within EX28DRAFT_3835at 41.326 kb on + strand, within EX28DRAFT_3835at 41.326 kb on + strand, within EX28DRAFT_3835at 41.327 kb on - strand, within EX28DRAFT_3835at 41.327 kb on - strand, within EX28DRAFT_3835at 41.371 kb on + strand, within EX28DRAFT_3835at 41.384 kb on - strand, within EX28DRAFT_3835at 41.508 kb on + strand, within EX28DRAFT_3835at 41.521 kb on + strand, within EX28DRAFT_3835at 41.566 kb on - strand, within EX28DRAFT_3835at 41.625 kb on + strand, within EX28DRAFT_3835at 41.724 kb on + strand, within EX28DRAFT_3835at 41.725 kb on - strand, within EX28DRAFT_3835at 41.746 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.750 kb on - strand, within EX28DRAFT_3835at 41.750 kb on - strand, within EX28DRAFT_3835at 41.766 kb on - strand, within EX28DRAFT_3835at 41.780 kb on - strand, within EX28DRAFT_3835at 41.789 kb on - strand, within EX28DRAFT_3835at 41.837 kb on + strandat 41.885 kb on + strandat 41.886 kb on - strandat 41.905 kb on - strandat 41.969 kb on - strandat 41.985 kb on + strandat 41.987 kb on + strandat 42.634 kb on + strand, within EX28DRAFT_3836at 42.634 kb on + strand, within EX28DRAFT_3836at 42.634 kb on + strand, within EX28DRAFT_3836at 42.638 kb on - strand, within EX28DRAFT_3836at 42.751 kb on - strand, within EX28DRAFT_3836at 42.793 kb on + strand, within EX28DRAFT_3836at 42.827 kb on - strand, within EX28DRAFT_3836at 42.908 kb on - strand, within EX28DRAFT_3836at 42.941 kb on + strand, within EX28DRAFT_3836at 43.024 kb on + strand, within EX28DRAFT_3836at 43.025 kb on - strand, within EX28DRAFT_3836at 43.025 kb on - strand, within EX28DRAFT_3836at 43.025 kb on - strand, within EX28DRAFT_3836at 43.289 kb on - strand, within EX28DRAFT_3836at 43.289 kb on - strand, within EX28DRAFT_3836at 43.300 kb on - strand, within EX28DRAFT_3836at 43.452 kb on + strand, within EX28DRAFT_3836at 43.503 kb on + strand, within EX28DRAFT_3836at 43.516 kb on + strand, within EX28DRAFT_3836at 43.876 kb on + strand, within EX28DRAFT_3836at 43.876 kb on + strand, within EX28DRAFT_3836at 43.958 kb on + strand, within EX28DRAFT_3836at 43.959 kb on - strand, within EX28DRAFT_3836at 43.966 kb on + strand, within EX28DRAFT_3836at 43.966 kb on + strand, within EX28DRAFT_3836at 43.969 kb on + strand, within EX28DRAFT_3836at 44.037 kb on + strandat 44.037 kb on + strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.220 kb on + strandat 44.220 kb on + strandat 44.227 kb on + strandat 44.287 kb on - strandat 44.344 kb on - strandat 44.427 kb on + strandat 44.518 kb on - strandat 44.610 kb on + strand, within EX28DRAFT_3837at 44.610 kb on + strand, within EX28DRAFT_3837at 44.610 kb on + strand, within EX28DRAFT_3837at 44.611 kb on - strand, within EX28DRAFT_3837at 44.615 kb on - strand, within EX28DRAFT_3837at 44.677 kb on + strand, within EX28DRAFT_3837at 44.677 kb on + strand, within EX28DRAFT_3837at 44.695 kb on - strand, within EX28DRAFT_3837at 44.812 kb on - strand, within EX28DRAFT_3837at 44.878 kb on + strand, within EX28DRAFT_3837at 44.879 kb on - strand, within EX28DRAFT_3837at 44.879 kb on - strand, within EX28DRAFT_3837at 44.969 kb on - strand, within EX28DRAFT_3837at 44.995 kb on - strand, within EX28DRAFT_3837at 45.130 kb on + strand, within EX28DRAFT_3837at 45.153 kb on + strand, within EX28DRAFT_3837at 45.153 kb on + strand, within EX28DRAFT_3837at 45.154 kb on - strand, within EX28DRAFT_3837at 45.154 kb on - strand, within EX28DRAFT_3837

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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41,253 - EX28DRAFT_3835 0.23 -1.0
41,324 - EX28DRAFT_3835 0.32 +0.6
41,324 - EX28DRAFT_3835 0.32 -0.0
41,326 + EX28DRAFT_3835 0.32 -0.5
41,326 + EX28DRAFT_3835 0.32 -0.0
41,327 - EX28DRAFT_3835 0.32 +0.1
41,327 - EX28DRAFT_3835 0.32 +1.0
41,371 + EX28DRAFT_3835 0.38 -0.8
41,384 - EX28DRAFT_3835 0.39 +0.0
41,508 + EX28DRAFT_3835 0.54 -0.3
41,521 + EX28DRAFT_3835 0.56 +0.6
41,566 - EX28DRAFT_3835 0.61 -0.1
41,625 + EX28DRAFT_3835 0.68 -0.4
41,724 + EX28DRAFT_3835 0.80 -0.8
41,725 - EX28DRAFT_3835 0.81 +0.4
41,746 + EX28DRAFT_3835 0.83 +0.2
41,749 + EX28DRAFT_3835 0.84 +1.3
41,749 + EX28DRAFT_3835 0.84 -1.1
41,749 + EX28DRAFT_3835 0.84 -1.1
41,750 - EX28DRAFT_3835 0.84 -0.0
41,750 - EX28DRAFT_3835 0.84 -0.6
41,766 - EX28DRAFT_3835 0.86 -1.0
41,780 - EX28DRAFT_3835 0.87 +0.4
41,789 - EX28DRAFT_3835 0.88 +0.0
41,837 + -0.1
41,885 + +0.4
41,886 - -0.1
41,905 - -0.7
41,969 - +0.0
41,985 + -0.5
41,987 + +0.1
42,634 + EX28DRAFT_3836 0.21 -0.1
42,634 + EX28DRAFT_3836 0.21 -0.1
42,634 + EX28DRAFT_3836 0.21 +0.0
42,638 - EX28DRAFT_3836 0.22 -0.1
42,751 - EX28DRAFT_3836 0.27 +0.4
42,793 + EX28DRAFT_3836 0.29 +0.2
42,827 - EX28DRAFT_3836 0.31 -0.4
42,908 - EX28DRAFT_3836 0.35 -0.3
42,941 + EX28DRAFT_3836 0.37 +0.5
43,024 + EX28DRAFT_3836 0.41 -0.0
43,025 - EX28DRAFT_3836 0.41 -0.0
43,025 - EX28DRAFT_3836 0.41 +1.4
43,025 - EX28DRAFT_3836 0.41 -0.6
43,289 - EX28DRAFT_3836 0.54 +0.1
43,289 - EX28DRAFT_3836 0.54 -0.1
43,300 - EX28DRAFT_3836 0.54 -0.3
43,452 + EX28DRAFT_3836 0.62 -0.0
43,503 + EX28DRAFT_3836 0.64 +0.6
43,516 + EX28DRAFT_3836 0.65 +1.2
43,876 + EX28DRAFT_3836 0.83 +0.3
43,876 + EX28DRAFT_3836 0.83 -0.3
43,958 + EX28DRAFT_3836 0.87 -0.9
43,959 - EX28DRAFT_3836 0.87 +0.2
43,966 + EX28DRAFT_3836 0.87 -0.1
43,966 + EX28DRAFT_3836 0.87 +0.2
43,969 + EX28DRAFT_3836 0.87 +0.7
44,037 + +0.2
44,037 + -0.6
44,038 - -0.5
44,038 - -0.7
44,038 - -1.0
44,220 + -0.4
44,220 + -0.3
44,227 + -0.2
44,287 - +0.4
44,344 - -0.6
44,427 + +0.0
44,518 - -1.4
44,610 + EX28DRAFT_3837 0.11 +0.7
44,610 + EX28DRAFT_3837 0.11 +0.3
44,610 + EX28DRAFT_3837 0.11 +0.9
44,611 - EX28DRAFT_3837 0.11 +0.6
44,615 - EX28DRAFT_3837 0.12 +0.3
44,677 + EX28DRAFT_3837 0.16 -0.1
44,677 + EX28DRAFT_3837 0.16 +0.0
44,695 - EX28DRAFT_3837 0.18 -1.0
44,812 - EX28DRAFT_3837 0.27 -0.6
44,878 + EX28DRAFT_3837 0.32 +0.4
44,879 - EX28DRAFT_3837 0.33 -2.1
44,879 - EX28DRAFT_3837 0.33 -0.2
44,969 - EX28DRAFT_3837 0.40 -0.2
44,995 - EX28DRAFT_3837 0.42 -0.3
45,130 + EX28DRAFT_3837 0.53 +0.1
45,153 + EX28DRAFT_3837 0.54 +0.7
45,153 + EX28DRAFT_3837 0.54 +0.4
45,154 - EX28DRAFT_3837 0.54 -0.4
45,154 - EX28DRAFT_3837 0.54 +0.8

Or see this region's nucleotide sequence