Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3785

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3783 and EX28DRAFT_3784 overlap by 4 nucleotidesEX28DRAFT_3784 and EX28DRAFT_3785 are separated by 106 nucleotidesEX28DRAFT_3785 and EX28DRAFT_3786 are separated by 40 nucleotidesEX28DRAFT_3786 and EX28DRAFT_3787 overlap by 8 nucleotides EX28DRAFT_3783: EX28DRAFT_3783 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 465,333 to 466,040 _3783 EX28DRAFT_3784: EX28DRAFT_3784 - hypothetical protein, at 466,037 to 466,441 _3784 EX28DRAFT_3785: EX28DRAFT_3785 - lipoprotein, YaeC family, at 466,548 to 467,363 _3785 EX28DRAFT_3786: EX28DRAFT_3786 - ABC-type metal ion transport system, permease component, at 467,404 to 468,057 _3786 EX28DRAFT_3787: EX28DRAFT_3787 - D-methionine ABC transporter, ATP-binding protein, at 468,050 to 469,081 _3787 Position (kb) 466 467 468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 465.674 kb on + strand, within EX28DRAFT_3783at 465.678 kb on + strand, within EX28DRAFT_3783at 465.679 kb on - strand, within EX28DRAFT_3783at 465.712 kb on - strand, within EX28DRAFT_3783at 465.821 kb on + strand, within EX28DRAFT_3783at 465.870 kb on + strand, within EX28DRAFT_3783at 465.870 kb on + strand, within EX28DRAFT_3783at 465.871 kb on - strand, within EX28DRAFT_3783at 465.888 kb on + strand, within EX28DRAFT_3783at 465.917 kb on - strand, within EX28DRAFT_3783at 465.995 kb on - strandat 466.385 kb on + strand, within EX28DRAFT_3784at 466.390 kb on + strand, within EX28DRAFT_3784at 466.390 kb on + strand, within EX28DRAFT_3784at 466.391 kb on - strand, within EX28DRAFT_3784at 466.391 kb on - strand, within EX28DRAFT_3784at 466.391 kb on - strand, within EX28DRAFT_3784at 466.441 kb on + strandat 466.444 kb on + strandat 466.444 kb on + strandat 466.445 kb on - strandat 466.445 kb on - strandat 466.445 kb on - strandat 466.476 kb on - strandat 466.514 kb on - strandat 466.530 kb on + strandat 466.533 kb on + strandat 466.533 kb on + strandat 466.533 kb on + strandat 466.534 kb on - strandat 466.534 kb on - strandat 466.534 kb on - strandat 466.559 kb on + strandat 466.615 kb on + strandat 466.616 kb on - strandat 466.697 kb on + strand, within EX28DRAFT_3785at 466.750 kb on + strand, within EX28DRAFT_3785at 466.751 kb on - strand, within EX28DRAFT_3785at 466.751 kb on - strand, within EX28DRAFT_3785at 467.061 kb on - strand, within EX28DRAFT_3785at 467.092 kb on + strand, within EX28DRAFT_3785at 467.092 kb on + strand, within EX28DRAFT_3785at 467.100 kb on - strand, within EX28DRAFT_3785at 467.158 kb on + strand, within EX28DRAFT_3785at 467.158 kb on + strand, within EX28DRAFT_3785at 467.194 kb on + strand, within EX28DRAFT_3785at 467.194 kb on + strand, within EX28DRAFT_3785at 467.195 kb on - strand, within EX28DRAFT_3785at 467.264 kb on + strand, within EX28DRAFT_3785at 467.331 kb on + strandat 467.332 kb on - strandat 467.350 kb on - strandat 467.355 kb on - strandat 467.374 kb on + strandat 467.399 kb on + strandat 467.405 kb on + strandat 467.456 kb on + strandat 467.456 kb on + strandat 467.505 kb on + strand, within EX28DRAFT_3786at 467.505 kb on + strand, within EX28DRAFT_3786at 467.506 kb on - strand, within EX28DRAFT_3786at 467.506 kb on - strand, within EX28DRAFT_3786at 467.507 kb on + strand, within EX28DRAFT_3786at 467.515 kb on - strand, within EX28DRAFT_3786at 467.517 kb on - strand, within EX28DRAFT_3786at 467.764 kb on + strand, within EX28DRAFT_3786at 467.765 kb on - strand, within EX28DRAFT_3786at 467.863 kb on - strand, within EX28DRAFT_3786at 467.863 kb on - strand, within EX28DRAFT_3786at 467.943 kb on - strand, within EX28DRAFT_3786at 467.943 kb on - strand, within EX28DRAFT_3786at 467.943 kb on - strand, within EX28DRAFT_3786at 467.951 kb on - strand, within EX28DRAFT_3786at 468.057 kb on + strandat 468.058 kb on - strandat 468.077 kb on + strandat 468.078 kb on - strandat 468.078 kb on - strandat 468.175 kb on - strand, within EX28DRAFT_3787

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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465,674 + EX28DRAFT_3783 0.48 -0.7
465,678 + EX28DRAFT_3783 0.49 -4.0
465,679 - EX28DRAFT_3783 0.49 +0.3
465,712 - EX28DRAFT_3783 0.54 -3.6
465,821 + EX28DRAFT_3783 0.69 +0.4
465,870 + EX28DRAFT_3783 0.76 -0.3
465,870 + EX28DRAFT_3783 0.76 +0.7
465,871 - EX28DRAFT_3783 0.76 +0.7
465,888 + EX28DRAFT_3783 0.78 +1.8
465,917 - EX28DRAFT_3783 0.82 +1.6
465,995 - -0.2
466,385 + EX28DRAFT_3784 0.86 -1.7
466,390 + EX28DRAFT_3784 0.87 +2.2
466,390 + EX28DRAFT_3784 0.87 -0.1
466,391 - EX28DRAFT_3784 0.87 -0.2
466,391 - EX28DRAFT_3784 0.87 +0.8
466,391 - EX28DRAFT_3784 0.87 -0.4
466,441 + -0.6
466,444 + +0.1
466,444 + -0.1
466,445 - +0.2
466,445 - +0.1
466,445 - +0.6
466,476 - +0.5
466,514 - +0.3
466,530 + -0.9
466,533 + -0.7
466,533 + -0.1
466,533 + +0.2
466,534 - +3.1
466,534 - +2.3
466,534 - +0.3
466,559 + +0.5
466,615 + -0.1
466,616 - -3.5
466,697 + EX28DRAFT_3785 0.18 -0.5
466,750 + EX28DRAFT_3785 0.25 -0.6
466,751 - EX28DRAFT_3785 0.25 +0.9
466,751 - EX28DRAFT_3785 0.25 +0.5
467,061 - EX28DRAFT_3785 0.63 +0.3
467,092 + EX28DRAFT_3785 0.67 +0.8
467,092 + EX28DRAFT_3785 0.67 +0.2
467,100 - EX28DRAFT_3785 0.68 +0.1
467,158 + EX28DRAFT_3785 0.75 -0.1
467,158 + EX28DRAFT_3785 0.75 +0.3
467,194 + EX28DRAFT_3785 0.79 -0.5
467,194 + EX28DRAFT_3785 0.79 +0.0
467,195 - EX28DRAFT_3785 0.79 -0.2
467,264 + EX28DRAFT_3785 0.88 -3.5
467,331 + +0.5
467,332 - -1.1
467,350 - -2.0
467,355 - -1.4
467,374 + +0.4
467,399 + +0.1
467,405 + -0.1
467,456 + -2.1
467,456 + +3.3
467,505 + EX28DRAFT_3786 0.15 +0.3
467,505 + EX28DRAFT_3786 0.15 -0.1
467,506 - EX28DRAFT_3786 0.16 +0.1
467,506 - EX28DRAFT_3786 0.16 -0.1
467,507 + EX28DRAFT_3786 0.16 +0.6
467,515 - EX28DRAFT_3786 0.17 +0.7
467,517 - EX28DRAFT_3786 0.17 +0.4
467,764 + EX28DRAFT_3786 0.55 +0.8
467,765 - EX28DRAFT_3786 0.55 +0.2
467,863 - EX28DRAFT_3786 0.70 +0.9
467,863 - EX28DRAFT_3786 0.70 -0.7
467,943 - EX28DRAFT_3786 0.82 +0.3
467,943 - EX28DRAFT_3786 0.82 +0.8
467,943 - EX28DRAFT_3786 0.82 +0.4
467,951 - EX28DRAFT_3786 0.84 +0.9
468,057 + +0.2
468,058 - -2.1
468,077 + -0.6
468,078 - +1.7
468,078 - +0.7
468,175 - EX28DRAFT_3787 0.12 +0.6

Or see this region's nucleotide sequence