Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3707 and EX28DRAFT_3708 are separated by 536 nucleotides EX28DRAFT_3708 and EX28DRAFT_3709 are separated by 7 nucleotides EX28DRAFT_3709 and EX28DRAFT_3710 are separated by 3 nucleotides
EX28DRAFT_3707: EX28DRAFT_3707 - Gamma-aminobutyrate permease and related permeases, at 377,452 to 378,822
_3707
EX28DRAFT_3708: EX28DRAFT_3708 - Transcriptional regulators, at 379,359 to 380,123
_3708
EX28DRAFT_3709: EX28DRAFT_3709 - RNA, at 380,131 to 380,243
_3709
EX28DRAFT_3710: EX28DRAFT_3710 - pyruvate dehydrogenase E1 component, homodimeric type, at 380,247 to 382,910
_3710
Position (kb) 379
380
381 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 378.414 kb on + strand, within EX28DRAFT_3707 at 378.414 kb on + strand, within EX28DRAFT_3707 at 378.477 kb on - strand, within EX28DRAFT_3707 at 378.477 kb on - strand, within EX28DRAFT_3707 at 378.518 kb on + strand, within EX28DRAFT_3707 at 378.531 kb on - strand, within EX28DRAFT_3707 at 378.569 kb on + strand, within EX28DRAFT_3707 at 378.570 kb on - strand, within EX28DRAFT_3707 at 378.576 kb on - strand, within EX28DRAFT_3707 at 378.655 kb on - strand, within EX28DRAFT_3707 at 378.766 kb on + strand at 378.766 kb on + strand at 378.766 kb on + strand at 378.766 kb on + strand at 378.766 kb on + strand at 378.767 kb on - strand at 378.767 kb on - strand at 378.767 kb on - strand at 378.767 kb on - strand at 378.767 kb on - strand at 378.767 kb on - strand at 378.767 kb on - strand at 378.768 kb on + strand at 378.768 kb on + strand at 378.768 kb on + strand at 378.769 kb on - strand at 378.769 kb on - strand at 378.836 kb on + strand at 378.845 kb on + strand at 378.846 kb on - strand at 378.846 kb on - strand at 378.866 kb on + strand at 378.867 kb on - strand at 378.888 kb on + strand at 378.888 kb on + strand at 378.889 kb on - strand at 378.889 kb on - strand at 378.940 kb on - strand at 379.024 kb on + strand at 379.059 kb on + strand at 379.060 kb on - strand at 379.077 kb on + strand at 379.163 kb on - strand at 379.169 kb on + strand at 379.216 kb on + strand at 379.288 kb on + strand at 379.390 kb on + strand at 379.923 kb on + strand, within EX28DRAFT_3708 at 380.138 kb on + strand at 380.424 kb on + strand at 380.424 kb on + strand at 380.856 kb on + strand, within EX28DRAFT_3710
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 378,414 + EX28DRAFT_3707 0.70 +0.7 378,414 + EX28DRAFT_3707 0.70 +1.5 378,477 - EX28DRAFT_3707 0.75 -3.0 378,477 - EX28DRAFT_3707 0.75 +0.3 378,518 + EX28DRAFT_3707 0.78 -1.2 378,531 - EX28DRAFT_3707 0.79 -4.0 378,569 + EX28DRAFT_3707 0.81 +0.8 378,570 - EX28DRAFT_3707 0.82 +0.9 378,576 - EX28DRAFT_3707 0.82 +1.3 378,655 - EX28DRAFT_3707 0.88 -1.9 378,766 + +2.2 378,766 + +0.6 378,766 + +1.1 378,766 + -0.1 378,766 + +0.4 378,767 - +0.3 378,767 - -0.1 378,767 - +1.0 378,767 - +0.8 378,767 - +0.6 378,767 - +0.6 378,767 - -0.7 378,768 + +0.5 378,768 + -0.6 378,768 + -3.1 378,769 - -0.1 378,769 - -3.1 378,836 + +1.3 378,845 + -1.3 378,846 - +0.0 378,846 - +2.3 378,866 + +0.7 378,867 - -1.2 378,888 + -0.8 378,888 + +2.6 378,889 - -0.9 378,889 - +0.7 378,940 - +0.1 379,024 + -1.6 379,059 + -0.0 379,060 - +1.7 379,077 + +0.6 379,163 - +0.8 379,169 + +0.1 379,216 + -1.3 379,288 + +0.5 379,390 + -0.2 379,923 + EX28DRAFT_3708 0.74 +0.8 380,138 + +0.8 380,424 + -3.9 380,424 + -1.7 380,856 + EX28DRAFT_3710 0.23 -5.3
Or see this region's nucleotide sequence