Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3645 and EX28DRAFT_3646 overlap by 4 nucleotides EX28DRAFT_3646 and EX28DRAFT_3647 overlap by 1 nucleotides EX28DRAFT_3647 and EX28DRAFT_3648 are separated by 53 nucleotides
EX28DRAFT_3645: EX28DRAFT_3645 - ribosomal RNA small subunit methyltransferase A, at 306,560 to 307,381
_3645
EX28DRAFT_3646: EX28DRAFT_3646 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 307,378 to 308,364
_3646
EX28DRAFT_3647: EX28DRAFT_3647 - periplasmic chaperone for outer membrane proteins SurA, at 308,364 to 309,650
_3647
EX28DRAFT_3648: EX28DRAFT_3648 - Organic solvent tolerance protein OstA, at 309,704 to 312,055
_3648
Position (kb) 308
309
310 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 307.389 kb on + strand at 307.423 kb on - strand at 307.423 kb on - strand at 307.575 kb on - strand, within EX28DRAFT_3646 at 307.575 kb on - strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.082 kb on - strand, within EX28DRAFT_3646 at 308.207 kb on - strand, within EX28DRAFT_3646 at 308.490 kb on - strand at 308.609 kb on + strand, within EX28DRAFT_3647 at 308.946 kb on - strand, within EX28DRAFT_3647 at 309.047 kb on + strand, within EX28DRAFT_3647 at 309.268 kb on + strand, within EX28DRAFT_3647 at 309.277 kb on + strand, within EX28DRAFT_3647 at 309.293 kb on - strand, within EX28DRAFT_3647 at 309.318 kb on + strand, within EX28DRAFT_3647 at 309.326 kb on + strand, within EX28DRAFT_3647 at 309.326 kb on + strand, within EX28DRAFT_3647 at 309.327 kb on - strand, within EX28DRAFT_3647 at 309.327 kb on - strand, within EX28DRAFT_3647 at 309.327 kb on - strand, within EX28DRAFT_3647 at 309.327 kb on - strand, within EX28DRAFT_3647 at 309.573 kb on - strand at 309.603 kb on - strand at 309.765 kb on + strand at 309.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 307,389 + -1.8 307,423 - -1.2 307,423 - -3.9 307,575 - EX28DRAFT_3646 0.20 +0.1 307,575 - EX28DRAFT_3646 0.20 -0.8 308,081 + EX28DRAFT_3646 0.71 -0.8 308,081 + EX28DRAFT_3646 0.71 -2.9 308,081 + EX28DRAFT_3646 0.71 -0.9 308,082 - EX28DRAFT_3646 0.71 -1.0 308,207 - EX28DRAFT_3646 0.84 -3.1 308,490 - -1.5 308,609 + EX28DRAFT_3647 0.19 -4.7 308,946 - EX28DRAFT_3647 0.45 -2.7 309,047 + EX28DRAFT_3647 0.53 -2.7 309,268 + EX28DRAFT_3647 0.70 -3.0 309,277 + EX28DRAFT_3647 0.71 -0.6 309,293 - EX28DRAFT_3647 0.72 +0.5 309,318 + EX28DRAFT_3647 0.74 -1.7 309,326 + EX28DRAFT_3647 0.75 -0.7 309,326 + EX28DRAFT_3647 0.75 -0.1 309,327 - EX28DRAFT_3647 0.75 -4.6 309,327 - EX28DRAFT_3647 0.75 -1.3 309,327 - EX28DRAFT_3647 0.75 -2.0 309,327 - EX28DRAFT_3647 0.75 -0.9 309,573 - -1.2 309,603 - -4.4 309,765 + -0.2 309,766 - +0.7
Or see this region's nucleotide sequence