Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3523 and EX28DRAFT_3524 are separated by 242 nucleotides EX28DRAFT_3524 and EX28DRAFT_3525 overlap by 1 nucleotides EX28DRAFT_3525 and EX28DRAFT_3526 are separated by 0 nucleotides EX28DRAFT_3526 and EX28DRAFT_3527 are separated by 51 nucleotides
EX28DRAFT_3523: EX28DRAFT_3523 - Predicted membrane protein, at 187,016 to 188,287
_3523
EX28DRAFT_3524: EX28DRAFT_3524 - Protein of unknown function (DUF2778), at 188,530 to 188,892
_3524
EX28DRAFT_3525: EX28DRAFT_3525 - hypothetical protein, at 188,892 to 189,404
_3525
EX28DRAFT_3526: EX28DRAFT_3526 - type VI secretion system effector, Hcp1 family, at 189,405 to 189,896
_3526
EX28DRAFT_3527: EX28DRAFT_3527 - Restriction endonuclease, at 189,948 to 191,130
_3527
Position (kb) 188
189
190 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 188.059 kb on + strand, within EX28DRAFT_3523 at 188.671 kb on - strand, within EX28DRAFT_3524 at 188.731 kb on - strand, within EX28DRAFT_3524 at 188.731 kb on - strand, within EX28DRAFT_3524 at 188.980 kb on + strand, within EX28DRAFT_3525 at 189.056 kb on + strand, within EX28DRAFT_3525 at 189.197 kb on - strand, within EX28DRAFT_3525 at 189.206 kb on - strand, within EX28DRAFT_3525 at 189.206 kb on - strand, within EX28DRAFT_3525 at 189.231 kb on - strand, within EX28DRAFT_3525 at 189.422 kb on + strand at 189.422 kb on + strand at 189.422 kb on + strand at 189.423 kb on - strand at 189.450 kb on - strand at 189.455 kb on - strand, within EX28DRAFT_3526 at 189.510 kb on + strand, within EX28DRAFT_3526 at 189.511 kb on - strand, within EX28DRAFT_3526 at 189.520 kb on + strand, within EX28DRAFT_3526 at 189.520 kb on + strand, within EX28DRAFT_3526 at 189.520 kb on + strand, within EX28DRAFT_3526 at 189.521 kb on - strand, within EX28DRAFT_3526 at 189.616 kb on - strand, within EX28DRAFT_3526 at 189.624 kb on - strand, within EX28DRAFT_3526 at 189.644 kb on + strand, within EX28DRAFT_3526 at 189.898 kb on + strand at 189.898 kb on + strand at 189.899 kb on - strand at 189.899 kb on - strand at 189.950 kb on - strand at 189.963 kb on + strand at 190.014 kb on + strand at 190.043 kb on + strand at 190.043 kb on + strand at 190.062 kb on + strand at 190.080 kb on + strand, within EX28DRAFT_3527 at 190.081 kb on - strand, within EX28DRAFT_3527 at 190.091 kb on + strand, within EX28DRAFT_3527 at 190.091 kb on + strand, within EX28DRAFT_3527 at 190.092 kb on - strand, within EX28DRAFT_3527 at 190.198 kb on - strand, within EX28DRAFT_3527 at 190.223 kb on + strand, within EX28DRAFT_3527 at 190.223 kb on + strand, within EX28DRAFT_3527 at 190.224 kb on - strand, within EX28DRAFT_3527 at 190.224 kb on - strand, within EX28DRAFT_3527 at 190.235 kb on + strand, within EX28DRAFT_3527 at 190.236 kb on - strand, within EX28DRAFT_3527 at 190.282 kb on - strand, within EX28DRAFT_3527 at 190.388 kb on - strand, within EX28DRAFT_3527
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 188,059 + EX28DRAFT_3523 0.82 -0.7 188,671 - EX28DRAFT_3524 0.39 -1.9 188,731 - EX28DRAFT_3524 0.55 -4.0 188,731 - EX28DRAFT_3524 0.55 -1.1 188,980 + EX28DRAFT_3525 0.17 -1.2 189,056 + EX28DRAFT_3525 0.32 -0.2 189,197 - EX28DRAFT_3525 0.59 -2.2 189,206 - EX28DRAFT_3525 0.61 +0.1 189,206 - EX28DRAFT_3525 0.61 -0.8 189,231 - EX28DRAFT_3525 0.66 +0.7 189,422 + -1.3 189,422 + -0.2 189,422 + +0.0 189,423 - -0.1 189,450 - -0.6 189,455 - EX28DRAFT_3526 0.10 +0.1 189,510 + EX28DRAFT_3526 0.21 +0.2 189,511 - EX28DRAFT_3526 0.22 -0.8 189,520 + EX28DRAFT_3526 0.23 +0.1 189,520 + EX28DRAFT_3526 0.23 +1.2 189,520 + EX28DRAFT_3526 0.23 -1.1 189,521 - EX28DRAFT_3526 0.24 -1.4 189,616 - EX28DRAFT_3526 0.43 -0.5 189,624 - EX28DRAFT_3526 0.45 +0.6 189,644 + EX28DRAFT_3526 0.49 +0.2 189,898 + -0.2 189,898 + -0.2 189,899 - -0.7 189,899 - -0.7 189,950 - +1.0 189,963 + +0.1 190,014 + +0.8 190,043 + -3.7 190,043 + +0.7 190,062 + +0.5 190,080 + EX28DRAFT_3527 0.11 +0.3 190,081 - EX28DRAFT_3527 0.11 +1.1 190,091 + EX28DRAFT_3527 0.12 +0.3 190,091 + EX28DRAFT_3527 0.12 +0.1 190,092 - EX28DRAFT_3527 0.12 +1.8 190,198 - EX28DRAFT_3527 0.21 -0.3 190,223 + EX28DRAFT_3527 0.23 +0.4 190,223 + EX28DRAFT_3527 0.23 +0.1 190,224 - EX28DRAFT_3527 0.23 +1.0 190,224 - EX28DRAFT_3527 0.23 -3.9 190,235 + EX28DRAFT_3527 0.24 +0.3 190,236 - EX28DRAFT_3527 0.24 -0.3 190,282 - EX28DRAFT_3527 0.28 -1.0 190,388 - EX28DRAFT_3527 0.37 -2.0
Or see this region's nucleotide sequence