Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3506 and EX28DRAFT_3507 are separated by 21 nucleotides EX28DRAFT_3507 and EX28DRAFT_3508 are separated by 185 nucleotides EX28DRAFT_3508 and EX28DRAFT_3509 are separated by 88 nucleotides EX28DRAFT_3509 and EX28DRAFT_3510 are separated by 135 nucleotides
EX28DRAFT_3506: EX28DRAFT_3506 - PAS domain S-box, at 167,719 to 173,301
_3506
EX28DRAFT_3507: EX28DRAFT_3507 - Response regulator, at 173,323 to 173,922
_3507
EX28DRAFT_3508: EX28DRAFT_3508 - Lactoylglutathione lyase and related lyases, at 174,108 to 174,494
_3508
EX28DRAFT_3509: EX28DRAFT_3509 - Protease subunit of ATP-dependent Clp proteases, at 174,583 to 175,185
_3509
EX28DRAFT_3510: EX28DRAFT_3510 - Uncharacterized conserved protein, at 175,321 to 176,442
_3510
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.153 kb on - strand at 173.325 kb on - strand at 173.539 kb on - strand, within EX28DRAFT_3507 at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.991 kb on + strand at 174.033 kb on + strand at 174.033 kb on + strand at 174.039 kb on + strand at 174.039 kb on + strand at 174.064 kb on - strand at 174.064 kb on - strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.109 kb on + strand at 174.359 kb on + strand, within EX28DRAFT_3508 at 174.363 kb on - strand, within EX28DRAFT_3508 at 174.363 kb on - strand, within EX28DRAFT_3508 at 174.400 kb on + strand, within EX28DRAFT_3508 at 174.489 kb on - strand at 174.494 kb on + strand at 174.495 kb on - strand at 174.495 kb on - strand at 174.543 kb on + strand at 174.578 kb on + strand at 174.578 kb on + strand at 174.589 kb on + strand at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.773 kb on - strand, within EX28DRAFT_3509 at 174.936 kb on + strand, within EX28DRAFT_3509 at 175.235 kb on - strand at 175.284 kb on - strand at 175.285 kb on + strand at 175.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 173,153 - -0.6 173,325 - -0.2 173,539 - EX28DRAFT_3507 0.36 -0.1 173,906 + -0.1 173,906 + +0.6 173,906 + +1.6 173,906 + -0.2 173,906 + -0.6 173,991 + +0.1 174,033 + -0.0 174,033 + +0.3 174,039 + -3.3 174,039 + +0.7 174,064 - -0.9 174,064 - +0.5 174,071 + +0.4 174,071 + +1.1 174,071 + +3.3 174,109 + -0.3 174,359 + EX28DRAFT_3508 0.65 +1.0 174,363 - EX28DRAFT_3508 0.66 -0.1 174,363 - EX28DRAFT_3508 0.66 +1.5 174,400 + EX28DRAFT_3508 0.75 -0.0 174,489 - +0.0 174,494 + -0.7 174,495 - +0.1 174,495 - +0.4 174,543 + +0.4 174,578 + -0.4 174,578 + +0.3 174,589 + +0.2 174,772 + EX28DRAFT_3509 0.31 +0.4 174,772 + EX28DRAFT_3509 0.31 -0.1 174,772 + EX28DRAFT_3509 0.31 -1.9 174,773 - EX28DRAFT_3509 0.32 -0.3 174,936 + EX28DRAFT_3509 0.59 -1.7 175,235 - +1.2 175,284 - +0.1 175,285 + -0.3 175,285 + +0.1
Or see this region's nucleotide sequence