Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3455

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3454 and EX28DRAFT_3455 are separated by 14 nucleotidesEX28DRAFT_3455 and EX28DRAFT_3456 are separated by 226 nucleotides EX28DRAFT_3454: EX28DRAFT_3454 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 126,722 to 127,630 _3454 EX28DRAFT_3455: EX28DRAFT_3455 - putative dehydratase, YjhG/YagF family, at 127,645 to 129,612 _3455 EX28DRAFT_3456: EX28DRAFT_3456 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 129,839 to 131,221 _3456 Position (kb) 127 128 129 130Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 126.653 kb on + strandat 126.653 kb on + strandat 126.654 kb on - strandat 126.654 kb on - strandat 126.656 kb on + strandat 126.656 kb on + strandat 126.656 kb on + strandat 126.657 kb on - strandat 126.657 kb on - strandat 126.657 kb on - strandat 126.657 kb on - strandat 126.904 kb on + strand, within EX28DRAFT_3454at 127.052 kb on + strand, within EX28DRAFT_3454at 127.055 kb on + strand, within EX28DRAFT_3454at 127.056 kb on - strand, within EX28DRAFT_3454at 127.134 kb on - strand, within EX28DRAFT_3454at 127.135 kb on + strand, within EX28DRAFT_3454at 127.135 kb on + strand, within EX28DRAFT_3454at 127.180 kb on - strand, within EX28DRAFT_3454at 127.208 kb on - strand, within EX28DRAFT_3454at 127.208 kb on - strand, within EX28DRAFT_3454at 127.327 kb on + strand, within EX28DRAFT_3454at 127.327 kb on + strand, within EX28DRAFT_3454at 127.443 kb on - strand, within EX28DRAFT_3454at 127.475 kb on + strand, within EX28DRAFT_3454at 128.580 kb on - strand, within EX28DRAFT_3455at 128.580 kb on - strand, within EX28DRAFT_3455at 129.043 kb on + strand, within EX28DRAFT_3455at 129.093 kb on + strand, within EX28DRAFT_3455at 129.181 kb on + strand, within EX28DRAFT_3455at 129.208 kb on - strand, within EX28DRAFT_3455at 129.208 kb on - strand, within EX28DRAFT_3455at 129.350 kb on + strand, within EX28DRAFT_3455at 129.371 kb on + strand, within EX28DRAFT_3455at 129.819 kb on + strandat 129.820 kb on - strandat 129.824 kb on - strandat 129.850 kb on - strandat 129.969 kb on + strandat 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.163 kb on + strand, within EX28DRAFT_3456at 130.164 kb on - strand, within EX28DRAFT_3456at 130.164 kb on - strand, within EX28DRAFT_3456at 130.178 kb on + strand, within EX28DRAFT_3456at 130.178 kb on + strand, within EX28DRAFT_3456at 130.178 kb on + strand, within EX28DRAFT_3456at 130.179 kb on - strand, within EX28DRAFT_3456at 130.179 kb on - strand, within EX28DRAFT_3456at 130.424 kb on + strand, within EX28DRAFT_3456at 130.445 kb on - strand, within EX28DRAFT_3456at 130.531 kb on + strand, within EX28DRAFT_3456at 130.532 kb on - strand, within EX28DRAFT_3456at 130.532 kb on - strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
126,653 + +0.2
126,653 + -0.9
126,654 - -0.7
126,654 - +0.2
126,656 + -1.3
126,656 + +0.3
126,656 + -1.1
126,657 - +0.7
126,657 - -0.1
126,657 - -0.7
126,657 - +0.4
126,904 + EX28DRAFT_3454 0.20 +0.6
127,052 + EX28DRAFT_3454 0.36 -0.9
127,055 + EX28DRAFT_3454 0.37 +0.8
127,056 - EX28DRAFT_3454 0.37 +0.1
127,134 - EX28DRAFT_3454 0.45 -0.8
127,135 + EX28DRAFT_3454 0.45 -0.1
127,135 + EX28DRAFT_3454 0.45 +1.3
127,180 - EX28DRAFT_3454 0.50 +0.6
127,208 - EX28DRAFT_3454 0.53 -0.8
127,208 - EX28DRAFT_3454 0.53 +0.4
127,327 + EX28DRAFT_3454 0.67 +0.5
127,327 + EX28DRAFT_3454 0.67 -0.5
127,443 - EX28DRAFT_3454 0.79 +0.3
127,475 + EX28DRAFT_3454 0.83 +0.5
128,580 - EX28DRAFT_3455 0.48 +0.3
128,580 - EX28DRAFT_3455 0.48 +1.5
129,043 + EX28DRAFT_3455 0.71 +0.3
129,093 + EX28DRAFT_3455 0.74 +0.6
129,181 + EX28DRAFT_3455 0.78 -0.4
129,208 - EX28DRAFT_3455 0.79 +0.2
129,208 - EX28DRAFT_3455 0.79 +0.5
129,350 + EX28DRAFT_3455 0.87 +0.0
129,371 + EX28DRAFT_3455 0.88 -0.0
129,819 + -4.3
129,820 - -1.5
129,824 - -0.2
129,850 - +0.0
129,969 + -0.2
130,163 + EX28DRAFT_3456 0.23 +0.3
130,163 + EX28DRAFT_3456 0.23 +0.4
130,163 + EX28DRAFT_3456 0.23 +0.3
130,163 + EX28DRAFT_3456 0.23 -0.8
130,163 + EX28DRAFT_3456 0.23 -0.2
130,164 - EX28DRAFT_3456 0.23 -1.0
130,164 - EX28DRAFT_3456 0.23 +0.1
130,178 + EX28DRAFT_3456 0.25 +0.7
130,178 + EX28DRAFT_3456 0.25 -0.7
130,178 + EX28DRAFT_3456 0.25 -2.3
130,179 - EX28DRAFT_3456 0.25 -0.1
130,179 - EX28DRAFT_3456 0.25 -0.2
130,424 + EX28DRAFT_3456 0.42 +1.0
130,445 - EX28DRAFT_3456 0.44 -0.6
130,531 + EX28DRAFT_3456 0.50 +0.6
130,532 - EX28DRAFT_3456 0.50 +0.2
130,532 - EX28DRAFT_3456 0.50 +0.4
130,604 + EX28DRAFT_3456 0.55 -0.0
130,604 + EX28DRAFT_3456 0.55 -0.0
130,604 + EX28DRAFT_3456 0.55 +0.0

Or see this region's nucleotide sequence