Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3451 and EX28DRAFT_3452 are separated by 10 nucleotides EX28DRAFT_3452 and EX28DRAFT_3453 are separated by 675 nucleotides
EX28DRAFT_3451: EX28DRAFT_3451 - carbamate kinase, at 123,248 to 124,159
_3451
EX28DRAFT_3452: EX28DRAFT_3452 - arginine deiminase (EC 3.5.3.6), at 124,170 to 125,390
_3452
EX28DRAFT_3453: EX28DRAFT_3453 - YhcH/YjgK/YiaL family protein, at 126,066 to 126,518
_3453
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.768 kb on + strand, within EX28DRAFT_3451 at 123.768 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.894 kb on + strand, within EX28DRAFT_3451 at 124.731 kb on + strand, within EX28DRAFT_3452 at 124.746 kb on + strand, within EX28DRAFT_3452 at 124.769 kb on + strand, within EX28DRAFT_3452 at 124.929 kb on + strand, within EX28DRAFT_3452 at 124.988 kb on + strand, within EX28DRAFT_3452 at 125.378 kb on - strand at 125.597 kb on - strand at 125.866 kb on + strand at 125.916 kb on + strand at 125.916 kb on + strand at 125.917 kb on - strand at 125.917 kb on - strand at 126.202 kb on - strand, within EX28DRAFT_3453
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 123,200 + -2.3 123,200 + +1.7 123,200 + +0.2 123,200 + +0.9 123,200 + +0.3 123,200 + +0.4 123,702 + EX28DRAFT_3451 0.50 -0.4 123,702 + EX28DRAFT_3451 0.50 +0.1 123,702 + EX28DRAFT_3451 0.50 -1.1 123,768 + EX28DRAFT_3451 0.57 +0.1 123,768 + EX28DRAFT_3451 0.57 +0.4 123,783 + EX28DRAFT_3451 0.59 +1.8 123,783 + EX28DRAFT_3451 0.59 -0.0 123,783 + EX28DRAFT_3451 0.59 -0.7 123,894 + EX28DRAFT_3451 0.71 +0.3 124,731 + EX28DRAFT_3452 0.46 -0.9 124,746 + EX28DRAFT_3452 0.47 -0.7 124,769 + EX28DRAFT_3452 0.49 -0.8 124,929 + EX28DRAFT_3452 0.62 -0.1 124,988 + EX28DRAFT_3452 0.67 +0.2 125,378 - -0.5 125,597 - +0.8 125,866 + +0.4 125,916 + -0.3 125,916 + -0.9 125,917 - -0.1 125,917 - -1.3 126,202 - EX28DRAFT_3453 0.30 -1.0
Or see this region's nucleotide sequence