Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3443 and EX28DRAFT_3444 are separated by 51 nucleotides EX28DRAFT_3444 and EX28DRAFT_3445 are separated by 73 nucleotides EX28DRAFT_3445 and EX28DRAFT_3446 are separated by 12 nucleotides
EX28DRAFT_3443: EX28DRAFT_3443 - Glycosyl hydrolase family 20, catalytic domain/Glycosyl hydrolase family 20, domain 2, at 115,571 to 117,955
_3443
EX28DRAFT_3444: EX28DRAFT_3444 - reactive intermediate/imine deaminase, at 118,007 to 118,393
_3444
EX28DRAFT_3445: EX28DRAFT_3445 - aspartate carbamoyltransferase, regulatory subunit, at 118,467 to 118,928
_3445
EX28DRAFT_3446: EX28DRAFT_3446 - aspartate carbamoyltransferase (EC 2.1.3.2), at 118,941 to 119,873
_3446
Position (kb) 118
119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 117.350 kb on + strand, within EX28DRAFT_3443 at 117.350 kb on + strand, within EX28DRAFT_3443 at 117.351 kb on - strand, within EX28DRAFT_3443 at 117.351 kb on - strand, within EX28DRAFT_3443 at 117.504 kb on - strand, within EX28DRAFT_3443 at 117.838 kb on + strand at 117.954 kb on - strand at 118.008 kb on + strand at 118.123 kb on - strand, within EX28DRAFT_3444 at 118.123 kb on - strand, within EX28DRAFT_3444 at 118.345 kb on - strand, within EX28DRAFT_3444 at 118.435 kb on + strand at 118.436 kb on - strand at 118.437 kb on + strand at 118.437 kb on + strand at 118.438 kb on - strand at 118.510 kb on + strand at 118.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 117,350 + EX28DRAFT_3443 0.75 -0.6 117,350 + EX28DRAFT_3443 0.75 +0.1 117,351 - EX28DRAFT_3443 0.75 -0.8 117,351 - EX28DRAFT_3443 0.75 -0.1 117,504 - EX28DRAFT_3443 0.81 -0.5 117,838 + -0.4 117,954 - +0.8 118,008 + -1.9 118,123 - EX28DRAFT_3444 0.30 -1.5 118,123 - EX28DRAFT_3444 0.30 -0.3 118,345 - EX28DRAFT_3444 0.87 -1.6 118,435 + -0.5 118,436 - +0.5 118,437 + +0.1 118,437 + +2.5 118,438 - -2.0 118,510 + -0.1 118,942 + +0.0
Or see this region's nucleotide sequence