Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3422 and EX28DRAFT_3423 are separated by 41 nucleotides EX28DRAFT_3423 and EX28DRAFT_3424 are separated by 332 nucleotides EX28DRAFT_3424 and EX28DRAFT_3425 are separated by 10 nucleotides EX28DRAFT_3425 and EX28DRAFT_3426 are separated by 2 nucleotides EX28DRAFT_3426 and EX28DRAFT_3427 are separated by 22 nucleotides
EX28DRAFT_3422: EX28DRAFT_3422 - Predicted Zn-dependent proteases and their inactivated homologs, at 93,672 to 95,024
_3422
EX28DRAFT_3423: EX28DRAFT_3423 - Soluble cytochrome b562, at 95,066 to 95,452
_3423
EX28DRAFT_3424: EX28DRAFT_3424 - PRD domain protein EF_0829/AHA_3910, at 95,785 to 96,105
_3424
EX28DRAFT_3425: EX28DRAFT_3425 - conserved hypothetical protein EF_0830/AHA_3911, at 96,116 to 96,478
_3425
EX28DRAFT_3426: EX28DRAFT_3426 - conserved hypothetical protein EF_0831/AHA_3912, at 96,481 to 96,780
_3426
EX28DRAFT_3427: EX28DRAFT_3427 - conserved hypothetical protein EF_0832/AHA_3913, at 96,803 to 97,579
_3427
Position (kb)
95
96
97 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 94.934 kb on + strand at 94.968 kb on - strand at 94.973 kb on + strand at 94.974 kb on - strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.991 kb on - strand at 95.025 kb on + strand at 95.042 kb on + strand at 95.042 kb on + strand at 95.313 kb on - strand, within EX28DRAFT_3423 at 95.368 kb on + strand, within EX28DRAFT_3423 at 95.516 kb on - strand at 95.519 kb on + strand at 95.520 kb on - strand at 95.597 kb on + strand at 95.629 kb on - strand at 95.648 kb on + strand at 95.649 kb on - strand at 95.649 kb on - strand at 95.708 kb on + strand at 95.835 kb on + strand, within EX28DRAFT_3424 at 95.835 kb on + strand, within EX28DRAFT_3424 at 95.835 kb on + strand, within EX28DRAFT_3424 at 95.851 kb on + strand, within EX28DRAFT_3424 at 95.851 kb on + strand, within EX28DRAFT_3424 at 95.891 kb on + strand, within EX28DRAFT_3424 at 96.127 kb on + strand at 96.128 kb on - strand at 96.326 kb on + strand, within EX28DRAFT_3425 at 96.333 kb on - strand, within EX28DRAFT_3425 at 96.333 kb on - strand, within EX28DRAFT_3425 at 96.344 kb on + strand, within EX28DRAFT_3425 at 96.415 kb on + strand, within EX28DRAFT_3425 at 96.447 kb on + strand at 96.448 kb on - strand at 96.476 kb on + strand at 96.476 kb on + strand at 96.476 kb on + strand at 96.742 kb on - strand, within EX28DRAFT_3426 at 96.782 kb on + strand at 96.789 kb on - strand at 96.810 kb on + strand at 96.811 kb on - strand at 96.811 kb on - strand at 96.822 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 94,934 + -0.0 94,968 - +0.1 94,973 + -4.4 94,974 - -3.9 94,975 + -0.2 94,975 + -0.3 94,975 + +0.8 94,975 + -0.0 94,975 + +0.4 94,975 + +0.7 94,975 + +0.3 94,975 + -0.9 94,975 + -0.4 94,975 + -0.8 94,976 - -0.5 94,976 - -0.4 94,976 - -0.2 94,976 - +0.3 94,976 - -0.4 94,976 - -0.2 94,991 - -0.8 95,025 + +0.5 95,042 + +0.4 95,042 + +0.6 95,313 - EX28DRAFT_3423 0.64 -0.0 95,368 + EX28DRAFT_3423 0.78 -2.9 95,516 - -1.5 95,519 + -0.7 95,520 - +0.5 95,597 + -0.3 95,629 - -2.9 95,648 + -0.2 95,649 - +0.1 95,649 - -0.2 95,708 + -0.1 95,835 + EX28DRAFT_3424 0.16 -0.7 95,835 + EX28DRAFT_3424 0.16 -0.1 95,835 + EX28DRAFT_3424 0.16 +0.1 95,851 + EX28DRAFT_3424 0.21 -0.6 95,851 + EX28DRAFT_3424 0.21 +0.7 95,891 + EX28DRAFT_3424 0.33 -0.6 96,127 + -1.7 96,128 - -1.3 96,326 + EX28DRAFT_3425 0.58 +0.9 96,333 - EX28DRAFT_3425 0.60 -2.7 96,333 - EX28DRAFT_3425 0.60 +1.9 96,344 + EX28DRAFT_3425 0.63 +0.6 96,415 + EX28DRAFT_3425 0.82 +0.9 96,447 + +0.3 96,448 - +0.3 96,476 + -0.4 96,476 + -0.3 96,476 + -0.9 96,742 - EX28DRAFT_3426 0.87 -0.3 96,782 + +0.5 96,789 - -0.2 96,810 + +0.1 96,811 - -0.8 96,811 - -1.0 96,822 + -3.1
Or see this region's nucleotide sequence