Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3424

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3422 and EX28DRAFT_3423 are separated by 41 nucleotidesEX28DRAFT_3423 and EX28DRAFT_3424 are separated by 332 nucleotidesEX28DRAFT_3424 and EX28DRAFT_3425 are separated by 10 nucleotidesEX28DRAFT_3425 and EX28DRAFT_3426 are separated by 2 nucleotidesEX28DRAFT_3426 and EX28DRAFT_3427 are separated by 22 nucleotides EX28DRAFT_3422: EX28DRAFT_3422 - Predicted Zn-dependent proteases and their inactivated homologs, at 93,672 to 95,024 _3422 EX28DRAFT_3423: EX28DRAFT_3423 - Soluble cytochrome b562, at 95,066 to 95,452 _3423 EX28DRAFT_3424: EX28DRAFT_3424 - PRD domain protein EF_0829/AHA_3910, at 95,785 to 96,105 _3424 EX28DRAFT_3425: EX28DRAFT_3425 - conserved hypothetical protein EF_0830/AHA_3911, at 96,116 to 96,478 _3425 EX28DRAFT_3426: EX28DRAFT_3426 - conserved hypothetical protein EF_0831/AHA_3912, at 96,481 to 96,780 _3426 EX28DRAFT_3427: EX28DRAFT_3427 - conserved hypothetical protein EF_0832/AHA_3913, at 96,803 to 97,579 _3427 Position (kb) 95 96 97Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 94.934 kb on + strandat 94.968 kb on - strandat 94.973 kb on + strandat 94.974 kb on - strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.975 kb on + strandat 94.976 kb on - strandat 94.976 kb on - strandat 94.976 kb on - strandat 94.976 kb on - strandat 94.976 kb on - strandat 94.976 kb on - strandat 94.991 kb on - strandat 95.025 kb on + strandat 95.042 kb on + strandat 95.042 kb on + strandat 95.313 kb on - strand, within EX28DRAFT_3423at 95.368 kb on + strand, within EX28DRAFT_3423at 95.516 kb on - strandat 95.519 kb on + strandat 95.520 kb on - strandat 95.597 kb on + strandat 95.629 kb on - strandat 95.648 kb on + strandat 95.649 kb on - strandat 95.649 kb on - strandat 95.708 kb on + strandat 95.835 kb on + strand, within EX28DRAFT_3424at 95.835 kb on + strand, within EX28DRAFT_3424at 95.835 kb on + strand, within EX28DRAFT_3424at 95.851 kb on + strand, within EX28DRAFT_3424at 95.851 kb on + strand, within EX28DRAFT_3424at 95.891 kb on + strand, within EX28DRAFT_3424at 96.127 kb on + strandat 96.128 kb on - strandat 96.326 kb on + strand, within EX28DRAFT_3425at 96.333 kb on - strand, within EX28DRAFT_3425at 96.333 kb on - strand, within EX28DRAFT_3425at 96.344 kb on + strand, within EX28DRAFT_3425at 96.415 kb on + strand, within EX28DRAFT_3425at 96.447 kb on + strandat 96.448 kb on - strandat 96.476 kb on + strandat 96.476 kb on + strandat 96.476 kb on + strandat 96.742 kb on - strand, within EX28DRAFT_3426at 96.782 kb on + strandat 96.789 kb on - strandat 96.810 kb on + strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.822 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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94,934 + -0.0
94,968 - +0.1
94,973 + -4.4
94,974 - -3.9
94,975 + -0.2
94,975 + -0.3
94,975 + +0.8
94,975 + -0.0
94,975 + +0.4
94,975 + +0.7
94,975 + +0.3
94,975 + -0.9
94,975 + -0.4
94,975 + -0.8
94,976 - -0.5
94,976 - -0.4
94,976 - -0.2
94,976 - +0.3
94,976 - -0.4
94,976 - -0.2
94,991 - -0.8
95,025 + +0.5
95,042 + +0.4
95,042 + +0.6
95,313 - EX28DRAFT_3423 0.64 -0.0
95,368 + EX28DRAFT_3423 0.78 -2.9
95,516 - -1.5
95,519 + -0.7
95,520 - +0.5
95,597 + -0.3
95,629 - -2.9
95,648 + -0.2
95,649 - +0.1
95,649 - -0.2
95,708 + -0.1
95,835 + EX28DRAFT_3424 0.16 -0.7
95,835 + EX28DRAFT_3424 0.16 -0.1
95,835 + EX28DRAFT_3424 0.16 +0.1
95,851 + EX28DRAFT_3424 0.21 -0.6
95,851 + EX28DRAFT_3424 0.21 +0.7
95,891 + EX28DRAFT_3424 0.33 -0.6
96,127 + -1.7
96,128 - -1.3
96,326 + EX28DRAFT_3425 0.58 +0.9
96,333 - EX28DRAFT_3425 0.60 -2.7
96,333 - EX28DRAFT_3425 0.60 +1.9
96,344 + EX28DRAFT_3425 0.63 +0.6
96,415 + EX28DRAFT_3425 0.82 +0.9
96,447 + +0.3
96,448 - +0.3
96,476 + -0.4
96,476 + -0.3
96,476 + -0.9
96,742 - EX28DRAFT_3426 0.87 -0.3
96,782 + +0.5
96,789 - -0.2
96,810 + +0.1
96,811 - -0.8
96,811 - -1.0
96,822 + -3.1

Or see this region's nucleotide sequence