Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3327 and EX28DRAFT_3328 are separated by 73 nucleotides EX28DRAFT_3328 and EX28DRAFT_3329 are separated by 236 nucleotides EX28DRAFT_3329 and EX28DRAFT_3330 are separated by 169 nucleotides
EX28DRAFT_3327: EX28DRAFT_3327 - 23S, at 1 to 172
_3327
EX28DRAFT_3328: EX28DRAFT_3328 - 5S, at 246 to 361
_3328
EX28DRAFT_3329: EX28DRAFT_3329 - tRNA, at 598 to 673
_3329
EX28DRAFT_3330: EX28DRAFT_3330 - AraC-type DNA-binding domain-containing proteins, at 843 to 1,688
_3330
Position (kb) 0
1 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 0.368 kb on + strand at 0.461 kb on + strand at 0.547 kb on + strand at 0.547 kb on + strand at 0.547 kb on + strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.550 kb on - strand at 0.716 kb on + strand at 0.809 kb on - strand at 0.899 kb on + strand at 0.945 kb on - strand, within EX28DRAFT_3330 at 0.948 kb on + strand, within EX28DRAFT_3330 at 0.949 kb on - strand, within EX28DRAFT_3330 at 1.085 kb on + strand, within EX28DRAFT_3330 at 1.085 kb on + strand, within EX28DRAFT_3330 at 1.089 kb on + strand, within EX28DRAFT_3330 at 1.101 kb on + strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.144 kb on - strand, within EX28DRAFT_3330 at 1.164 kb on + strand, within EX28DRAFT_3330 at 1.164 kb on + strand, within EX28DRAFT_3330 at 1.165 kb on - strand, within EX28DRAFT_3330
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 368 + -2.8 461 + -0.1 547 + -1.2 547 + -0.7 547 + +0.4 548 - -0.3 548 - +0.2 548 - -0.2 548 - +0.0 548 - +0.2 548 - -0.4 548 - -0.4 550 - -0.1 716 + +0.2 809 - -3.8 899 + +0.8 945 - EX28DRAFT_3330 0.12 -0.2 948 + EX28DRAFT_3330 0.12 -0.1 949 - EX28DRAFT_3330 0.13 +0.2 1,085 + EX28DRAFT_3330 0.29 -4.3 1,085 + EX28DRAFT_3330 0.29 -1.3 1,089 + EX28DRAFT_3330 0.29 -0.3 1,101 + EX28DRAFT_3330 0.30 -0.2 1,102 - EX28DRAFT_3330 0.31 +0.4 1,102 - EX28DRAFT_3330 0.31 -0.3 1,102 - EX28DRAFT_3330 0.31 -0.0 1,102 - EX28DRAFT_3330 0.31 +0.4 1,144 - EX28DRAFT_3330 0.36 +0.7 1,164 + EX28DRAFT_3330 0.38 +0.0 1,164 + EX28DRAFT_3330 0.38 +1.7 1,165 - EX28DRAFT_3330 0.38 +0.5
Or see this region's nucleotide sequence