Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3266 and EX28DRAFT_3267 are separated by 266 nucleotides EX28DRAFT_3267 and EX28DRAFT_3268 are separated by 86 nucleotides EX28DRAFT_3268 and EX28DRAFT_3269 overlap by 1 nucleotides
EX28DRAFT_3266: EX28DRAFT_3266 - Predicted permeases, at 556,824 to 557,924
_3266
EX28DRAFT_3267: EX28DRAFT_3267 - Leucyl aminopeptidase, at 558,191 to 559,702
_3267
EX28DRAFT_3268: EX28DRAFT_3268 - DNA polymerase III, chi subunit (EC 2.7.7.7), at 559,789 to 560,232
_3268
EX28DRAFT_3269: EX28DRAFT_3269 - valyl-tRNA synthetase (EC 6.1.1.9), at 560,232 to 563,087
_3269
Position (kb) 558
559
560 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 557.994 kb on - strand at 558.028 kb on - strand at 558.084 kb on - strand at 558.089 kb on - strand at 558.185 kb on + strand at 558.185 kb on + strand at 558.185 kb on + strand at 558.204 kb on + strand at 558.319 kb on + strand at 558.794 kb on + strand, within EX28DRAFT_3267 at 558.896 kb on + strand, within EX28DRAFT_3267 at 558.950 kb on + strand, within EX28DRAFT_3267 at 559.024 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.119 kb on + strand, within EX28DRAFT_3267 at 559.120 kb on - strand, within EX28DRAFT_3267 at 559.184 kb on + strand, within EX28DRAFT_3267 at 559.264 kb on - strand, within EX28DRAFT_3267 at 559.466 kb on + strand, within EX28DRAFT_3267 at 559.466 kb on + strand, within EX28DRAFT_3267 at 559.467 kb on - strand, within EX28DRAFT_3267 at 559.572 kb on - strand at 559.701 kb on - strand at 559.755 kb on + strand at 559.760 kb on - strand at 559.763 kb on + strand at 559.764 kb on - strand at 559.764 kb on - strand at 559.786 kb on + strand at 559.787 kb on - strand at 559.787 kb on - strand at 559.788 kb on + strand at 559.788 kb on + strand at 559.788 kb on + strand at 559.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 557,994 - -2.8 558,028 - +0.1 558,084 - -3.6 558,089 - -5.1 558,185 + -1.6 558,185 + -2.5 558,185 + -1.3 558,204 + -1.8 558,319 + -2.7 558,794 + EX28DRAFT_3267 0.40 -2.1 558,896 + EX28DRAFT_3267 0.47 -1.8 558,950 + EX28DRAFT_3267 0.50 -2.8 559,024 + EX28DRAFT_3267 0.55 -5.1 559,064 + EX28DRAFT_3267 0.58 -1.9 559,064 + EX28DRAFT_3267 0.58 -1.1 559,064 + EX28DRAFT_3267 0.58 -1.4 559,064 + EX28DRAFT_3267 0.58 -3.5 559,119 + EX28DRAFT_3267 0.61 -1.5 559,120 - EX28DRAFT_3267 0.61 -1.5 559,184 + EX28DRAFT_3267 0.66 -1.2 559,264 - EX28DRAFT_3267 0.71 -2.9 559,466 + EX28DRAFT_3267 0.84 -0.9 559,466 + EX28DRAFT_3267 0.84 -2.6 559,467 - EX28DRAFT_3267 0.84 -1.3 559,572 - -2.6 559,701 - +0.6 559,755 + +0.1 559,760 - +0.1 559,763 + -0.6 559,764 - -4.1 559,764 - -0.8 559,786 + +0.9 559,787 - +0.0 559,787 - -2.7 559,788 + +0.2 559,788 + -0.3 559,788 + -0.9 559,789 - -0.3
Or see this region's nucleotide sequence