Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3256 and EX28DRAFT_3257 are separated by 22 nucleotides EX28DRAFT_3257 and EX28DRAFT_3258 are separated by 82 nucleotides EX28DRAFT_3258 and EX28DRAFT_3259 are separated by 45 nucleotides
EX28DRAFT_3256: EX28DRAFT_3256 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 548,139 to 549,572
_3256
EX28DRAFT_3257: EX28DRAFT_3257 - ribosomal subunit interface protein, at 549,595 to 549,882
_3257
EX28DRAFT_3258: EX28DRAFT_3258 - PTS IIA-like nitrogen-regulatory protein PtsN, at 549,965 to 550,456
_3258
EX28DRAFT_3259: EX28DRAFT_3259 - Predicted P-loop-containing kinase, at 550,502 to 551,356
_3259
Position (kb) 549
550 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 549.595 kb on - strand at 549.595 kb on - strand at 549.682 kb on + strand, within EX28DRAFT_3257 at 549.682 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.706 kb on + strand, within EX28DRAFT_3257 at 549.707 kb on - strand, within EX28DRAFT_3257 at 549.707 kb on - strand, within EX28DRAFT_3257 at 549.708 kb on + strand, within EX28DRAFT_3257 at 549.708 kb on + strand, within EX28DRAFT_3257 at 549.709 kb on - strand, within EX28DRAFT_3257 at 549.738 kb on + strand, within EX28DRAFT_3257 at 549.738 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.805 kb on + strand, within EX28DRAFT_3257 at 549.806 kb on - strand, within EX28DRAFT_3257 at 549.806 kb on - strand, within EX28DRAFT_3257 at 549.858 kb on + strand at 549.880 kb on + strand at 549.880 kb on + strand at 549.881 kb on - strand at 549.947 kb on + strand at 550.413 kb on - strand at 550.420 kb on + strand at 550.676 kb on - strand, within EX28DRAFT_3259
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 549,595 - -0.7 549,595 - +0.2 549,682 + EX28DRAFT_3257 0.30 +0.6 549,682 + EX28DRAFT_3257 0.30 +0.6 549,706 + EX28DRAFT_3257 0.39 -0.1 549,706 + EX28DRAFT_3257 0.39 +1.0 549,706 + EX28DRAFT_3257 0.39 +1.1 549,706 + EX28DRAFT_3257 0.39 +1.8 549,706 + EX28DRAFT_3257 0.39 -0.2 549,707 - EX28DRAFT_3257 0.39 -0.1 549,707 - EX28DRAFT_3257 0.39 +0.8 549,708 + EX28DRAFT_3257 0.39 +0.5 549,708 + EX28DRAFT_3257 0.39 +1.3 549,709 - EX28DRAFT_3257 0.40 -2.5 549,738 + EX28DRAFT_3257 0.50 -1.2 549,738 + EX28DRAFT_3257 0.50 +0.8 549,805 + EX28DRAFT_3257 0.73 +0.6 549,805 + EX28DRAFT_3257 0.73 +0.4 549,805 + EX28DRAFT_3257 0.73 -0.1 549,806 - EX28DRAFT_3257 0.73 -4.0 549,806 - EX28DRAFT_3257 0.73 -0.0 549,858 + +0.5 549,880 + +2.3 549,880 + +0.4 549,881 - +0.2 549,947 + +0.8 550,413 - -0.1 550,420 + -0.4 550,676 - EX28DRAFT_3259 0.20 -0.3
Or see this region's nucleotide sequence