Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3201 and EX28DRAFT_3202 are separated by 128 nucleotides EX28DRAFT_3202 and EX28DRAFT_3203 overlap by 21 nucleotides EX28DRAFT_3203 and EX28DRAFT_3204 are separated by 14 nucleotides EX28DRAFT_3204 and EX28DRAFT_3205 overlap by 14 nucleotides EX28DRAFT_3205 and EX28DRAFT_3206 overlap by 7 nucleotides
EX28DRAFT_3201: EX28DRAFT_3201 - Predicted nucleoside-diphosphate-sugar epimerases, at 502,185 to 502,829
_3201
EX28DRAFT_3202: EX28DRAFT_3202 - intracellular protease, PfpI family, at 502,958 to 503,476
_3202
EX28DRAFT_3203: EX28DRAFT_3203 - Uncharacterized protein conserved in bacteria, at 503,456 to 503,890
_3203
EX28DRAFT_3204: EX28DRAFT_3204 - Predicted endonuclease containing a URI domain, at 503,905 to 504,234
_3204
EX28DRAFT_3205: EX28DRAFT_3205 - Predicted acetyltransferase, at 504,221 to 504,724
_3205
EX28DRAFT_3206: EX28DRAFT_3206 - Putative lipid carrier protein, at 504,718 to 505,242
_3206
Position (kb) 503
504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 502.566 kb on - strand, within EX28DRAFT_3201 at 502.568 kb on - strand, within EX28DRAFT_3201 at 502.581 kb on - strand, within EX28DRAFT_3201 at 502.744 kb on + strand, within EX28DRAFT_3201 at 502.744 kb on + strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.812 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.895 kb on + strand at 502.895 kb on + strand at 502.896 kb on - strand at 502.901 kb on + strand at 502.901 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.906 kb on - strand at 502.906 kb on - strand at 502.906 kb on - strand at 502.909 kb on + strand at 503.474 kb on + strand at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.645 kb on - strand, within EX28DRAFT_3203 at 503.761 kb on - strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.785 kb on - strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.790 kb on + strand, within EX28DRAFT_3203 at 503.791 kb on - strand, within EX28DRAFT_3203 at 503.909 kb on + strand at 503.909 kb on + strand at 503.910 kb on - strand at 503.910 kb on - strand at 503.926 kb on - strand at 503.926 kb on - strand at 503.941 kb on + strand, within EX28DRAFT_3204 at 503.942 kb on - strand, within EX28DRAFT_3204 at 503.962 kb on + strand, within EX28DRAFT_3204 at 503.992 kb on + strand, within EX28DRAFT_3204 at 504.081 kb on - strand, within EX28DRAFT_3204 at 504.081 kb on - strand, within EX28DRAFT_3204 at 504.222 kb on + strand at 504.223 kb on - strand at 504.223 kb on - strand at 504.223 kb on - strand at 504.444 kb on + strand, within EX28DRAFT_3205 at 504.477 kb on + strand, within EX28DRAFT_3205 at 504.558 kb on + strand, within EX28DRAFT_3205 at 504.605 kb on - strand, within EX28DRAFT_3205 at 504.734 kb on - strand at 504.832 kb on + strand, within EX28DRAFT_3206 at 504.833 kb on - strand, within EX28DRAFT_3206 at 504.863 kb on + strand, within EX28DRAFT_3206
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 502,566 - EX28DRAFT_3201 0.59 -2.3 502,568 - EX28DRAFT_3201 0.59 -0.4 502,581 - EX28DRAFT_3201 0.61 +0.3 502,744 + EX28DRAFT_3201 0.87 -1.6 502,744 + EX28DRAFT_3201 0.87 -3.1 502,745 - EX28DRAFT_3201 0.87 +0.9 502,745 - EX28DRAFT_3201 0.87 +0.3 502,745 - EX28DRAFT_3201 0.87 -3.4 502,745 - EX28DRAFT_3201 0.87 -0.1 502,745 - EX28DRAFT_3201 0.87 -0.0 502,745 - EX28DRAFT_3201 0.87 -3.2 502,745 - EX28DRAFT_3201 0.87 +0.4 502,812 - -0.4 502,885 - -0.0 502,885 - +0.6 502,885 - +0.3 502,885 - -1.6 502,885 - -0.8 502,885 - -2.1 502,895 + -4.6 502,895 + +0.2 502,896 - -0.4 502,901 + -1.0 502,901 + +2.0 502,905 + -3.4 502,905 + -0.4 502,905 + -0.3 502,905 + +2.1 502,906 - -1.4 502,906 - -0.3 502,906 - +0.7 502,909 + +1.3 503,474 + -0.1 503,590 - EX28DRAFT_3203 0.31 -3.4 503,590 - EX28DRAFT_3203 0.31 +0.5 503,645 - EX28DRAFT_3203 0.43 +2.5 503,761 - EX28DRAFT_3203 0.70 -0.9 503,784 + EX28DRAFT_3203 0.75 -0.2 503,784 + EX28DRAFT_3203 0.75 -3.3 503,785 - EX28DRAFT_3203 0.76 +0.4 503,787 + EX28DRAFT_3203 0.76 -1.8 503,787 + EX28DRAFT_3203 0.76 -1.1 503,790 + EX28DRAFT_3203 0.77 -0.2 503,791 - EX28DRAFT_3203 0.77 -1.0 503,909 + -1.2 503,909 + +0.4 503,910 - +0.9 503,910 - -0.3 503,926 - -0.2 503,926 - +0.3 503,941 + EX28DRAFT_3204 0.11 +0.5 503,942 - EX28DRAFT_3204 0.11 -2.6 503,962 + EX28DRAFT_3204 0.17 -1.4 503,992 + EX28DRAFT_3204 0.26 +0.1 504,081 - EX28DRAFT_3204 0.53 +0.3 504,081 - EX28DRAFT_3204 0.53 +0.1 504,222 + -0.2 504,223 - -0.7 504,223 - -0.7 504,223 - +0.0 504,444 + EX28DRAFT_3205 0.44 -1.9 504,477 + EX28DRAFT_3205 0.51 +0.2 504,558 + EX28DRAFT_3205 0.67 +0.1 504,605 - EX28DRAFT_3205 0.76 +0.4 504,734 - +0.7 504,832 + EX28DRAFT_3206 0.22 -0.2 504,833 - EX28DRAFT_3206 0.22 +0.1 504,863 + EX28DRAFT_3206 0.28 +0.5
Or see this region's nucleotide sequence