Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3186 and EX28DRAFT_3187 are separated by 20 nucleotides EX28DRAFT_3187 and EX28DRAFT_3188 are separated by 10 nucleotides EX28DRAFT_3188 and EX28DRAFT_3189 overlap by 11 nucleotides EX28DRAFT_3189 and EX28DRAFT_3190 are separated by 16 nucleotides
EX28DRAFT_3186: EX28DRAFT_3186 - D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit, at 487,114 to 488,409
_3186
EX28DRAFT_3187: EX28DRAFT_3187 - PTS system, mannose/fructose/sorbose family, IIB component, at 488,430 to 488,903
_3187
EX28DRAFT_3188: EX28DRAFT_3188 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC, at 488,914 to 489,693
_3188
EX28DRAFT_3189: EX28DRAFT_3189 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID, at 489,683 to 490,561
_3189
EX28DRAFT_3190: EX28DRAFT_3190 - Phosphotransferase system, mannose/fructose-specific component IIA, at 490,578 to 491,012
_3190
Position (kb) 488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 488.004 kb on - strand, within EX28DRAFT_3186 at 488.101 kb on + strand, within EX28DRAFT_3186 at 488.102 kb on - strand, within EX28DRAFT_3186 at 488.117 kb on - strand, within EX28DRAFT_3186 at 488.162 kb on - strand, within EX28DRAFT_3186 at 488.182 kb on + strand, within EX28DRAFT_3186 at 488.272 kb on + strand, within EX28DRAFT_3186 at 488.293 kb on - strand at 488.357 kb on + strand at 488.357 kb on + strand at 488.358 kb on - strand at 488.358 kb on - strand at 488.358 kb on - strand at 488.488 kb on + strand, within EX28DRAFT_3187 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.748 kb on - strand, within EX28DRAFT_3187 at 489.080 kb on + strand, within EX28DRAFT_3188 at 489.243 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.335 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.392 kb on - strand, within EX28DRAFT_3188 at 489.526 kb on + strand, within EX28DRAFT_3188 at 489.535 kb on + strand, within EX28DRAFT_3188 at 489.633 kb on + strand at 489.634 kb on - strand at 489.634 kb on - strand at 489.691 kb on + strand at 489.692 kb on - strand at 489.692 kb on - strand at 489.692 kb on - strand at 489.805 kb on - strand, within EX28DRAFT_3189 at 489.859 kb on + strand, within EX28DRAFT_3189 at 489.860 kb on - strand, within EX28DRAFT_3189 at 490.235 kb on + strand, within EX28DRAFT_3189 at 490.349 kb on + strand, within EX28DRAFT_3189 at 490.582 kb on + strand at 490.582 kb on + strand at 490.589 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 488,004 - EX28DRAFT_3186 0.69 +0.2 488,101 + EX28DRAFT_3186 0.76 -3.1 488,102 - EX28DRAFT_3186 0.76 -0.1 488,117 - EX28DRAFT_3186 0.77 +0.5 488,162 - EX28DRAFT_3186 0.81 +0.2 488,182 + EX28DRAFT_3186 0.82 +0.3 488,272 + EX28DRAFT_3186 0.89 -0.2 488,293 - -0.0 488,357 + +0.5 488,357 + +0.3 488,358 - +0.1 488,358 - -0.7 488,358 - -0.4 488,488 + EX28DRAFT_3187 0.12 +0.7 488,747 + EX28DRAFT_3187 0.67 +0.3 488,747 + EX28DRAFT_3187 0.67 +0.5 488,748 - EX28DRAFT_3187 0.67 -2.4 489,080 + EX28DRAFT_3188 0.21 +0.1 489,243 + EX28DRAFT_3188 0.42 -0.8 489,309 + EX28DRAFT_3188 0.51 -1.2 489,309 + EX28DRAFT_3188 0.51 -1.2 489,334 + EX28DRAFT_3188 0.54 -0.6 489,334 + EX28DRAFT_3188 0.54 -0.3 489,335 - EX28DRAFT_3188 0.54 -0.1 489,365 - EX28DRAFT_3188 0.58 +0.4 489,365 - EX28DRAFT_3188 0.58 +0.6 489,392 - EX28DRAFT_3188 0.61 +0.6 489,526 + EX28DRAFT_3188 0.78 +0.4 489,535 + EX28DRAFT_3188 0.80 +0.3 489,633 + -0.6 489,634 - -0.0 489,634 - -1.5 489,691 + +0.6 489,692 - +2.4 489,692 - +0.6 489,692 - +0.9 489,805 - EX28DRAFT_3189 0.14 -2.3 489,859 + EX28DRAFT_3189 0.20 -0.6 489,860 - EX28DRAFT_3189 0.20 +2.0 490,235 + EX28DRAFT_3189 0.63 +1.0 490,349 + EX28DRAFT_3189 0.76 +0.3 490,582 + +0.2 490,582 + -0.1 490,589 + -0.5
Or see this region's nucleotide sequence