Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3155

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3153 and EX28DRAFT_3154 are separated by 83 nucleotidesEX28DRAFT_3154 and EX28DRAFT_3155 are separated by 70 nucleotidesEX28DRAFT_3155 and EX28DRAFT_3156 are separated by 56 nucleotidesEX28DRAFT_3156 and EX28DRAFT_3157 are separated by 80 nucleotides EX28DRAFT_3153: EX28DRAFT_3153 - 16S RNA G1207 methylase RsmC, at 455,634 to 456,770 _3153 EX28DRAFT_3154: EX28DRAFT_3154 - Predicted metal-dependent hydrolase, at 456,854 to 457,357 _3154 EX28DRAFT_3155: EX28DRAFT_3155 - Predicted dehydrogenases and related proteins, at 457,428 to 458,426 _3155 EX28DRAFT_3156: EX28DRAFT_3156 - RNA, at 458,483 to 458,596 _3156 EX28DRAFT_3157: EX28DRAFT_3157 - integral membrane protein, TerC family, at 458,677 to 459,645 _3157 Position (kb) 457 458 459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 456.569 kb on - strand, within EX28DRAFT_3153at 456.670 kb on + strandat 456.670 kb on + strandat 456.671 kb on - strandat 456.760 kb on - strandat 456.760 kb on - strandat 456.787 kb on + strandat 456.822 kb on + strandat 456.823 kb on - strandat 456.833 kb on + strandat 456.865 kb on + strandat 456.866 kb on - strandat 456.866 kb on - strandat 456.866 kb on - strandat 456.866 kb on - strandat 456.870 kb on - strandat 456.870 kb on - strandat 456.870 kb on - strandat 456.895 kb on - strandat 457.002 kb on - strand, within EX28DRAFT_3154at 457.003 kb on + strand, within EX28DRAFT_3154at 457.004 kb on - strand, within EX28DRAFT_3154at 457.061 kb on + strand, within EX28DRAFT_3154at 457.260 kb on - strand, within EX28DRAFT_3154at 457.260 kb on - strand, within EX28DRAFT_3154at 457.385 kb on + strandat 457.385 kb on + strandat 457.386 kb on - strandat 457.386 kb on - strandat 457.386 kb on - strandat 457.386 kb on - strandat 457.386 kb on - strandat 457.416 kb on - strandat 457.420 kb on - strandat 457.427 kb on + strandat 457.427 kb on + strandat 457.432 kb on + strandat 457.505 kb on + strandat 457.505 kb on + strandat 457.506 kb on - strandat 457.506 kb on - strandat 457.521 kb on + strandat 457.522 kb on - strandat 457.629 kb on + strand, within EX28DRAFT_3155at 457.629 kb on + strand, within EX28DRAFT_3155at 457.630 kb on - strand, within EX28DRAFT_3155at 457.630 kb on - strand, within EX28DRAFT_3155at 457.631 kb on + strand, within EX28DRAFT_3155at 457.931 kb on + strand, within EX28DRAFT_3155at 457.955 kb on + strand, within EX28DRAFT_3155at 457.956 kb on - strand, within EX28DRAFT_3155at 457.956 kb on - strand, within EX28DRAFT_3155at 457.958 kb on + strand, within EX28DRAFT_3155at 457.959 kb on - strand, within EX28DRAFT_3155at 458.252 kb on + strand, within EX28DRAFT_3155at 458.253 kb on - strand, within EX28DRAFT_3155at 458.256 kb on - strand, within EX28DRAFT_3155at 458.261 kb on + strand, within EX28DRAFT_3155at 458.261 kb on + strand, within EX28DRAFT_3155at 458.261 kb on + strand, within EX28DRAFT_3155at 458.261 kb on + strand, within EX28DRAFT_3155at 458.261 kb on + strand, within EX28DRAFT_3155at 458.262 kb on - strand, within EX28DRAFT_3155at 458.268 kb on + strand, within EX28DRAFT_3155at 458.268 kb on + strand, within EX28DRAFT_3155at 458.477 kb on + strandat 458.478 kb on - strandat 458.485 kb on + strandat 458.502 kb on - strand, within EX28DRAFT_3156at 458.527 kb on + strand, within EX28DRAFT_3156at 458.527 kb on + strand, within EX28DRAFT_3156at 458.575 kb on + strand, within EX28DRAFT_3156at 458.575 kb on + strand, within EX28DRAFT_3156at 458.576 kb on - strand, within EX28DRAFT_3156at 458.604 kb on + strandat 458.604 kb on + strandat 458.604 kb on + strandat 458.604 kb on + strandat 458.605 kb on - strandat 458.605 kb on - strandat 458.605 kb on - strandat 458.610 kb on + strandat 458.611 kb on - strandat 458.658 kb on + strandat 458.658 kb on + strandat 458.659 kb on - strandat 458.673 kb on + strandat 458.673 kb on + strandat 458.676 kb on + strandat 458.860 kb on + strand, within EX28DRAFT_3157at 458.860 kb on + strand, within EX28DRAFT_3157at 459.026 kb on - strand, within EX28DRAFT_3157

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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456,569 - EX28DRAFT_3153 0.82 -0.0
456,670 + +0.1
456,670 + -0.1
456,671 - +0.5
456,760 - +0.8
456,760 - +0.5
456,787 + -0.0
456,822 + +0.6
456,823 - +0.2
456,833 + -0.5
456,865 + -2.9
456,866 - +0.7
456,866 - +0.4
456,866 - -1.0
456,866 - -0.9
456,870 - +0.9
456,870 - -2.1
456,870 - -0.0
456,895 - -0.4
457,002 - EX28DRAFT_3154 0.29 -0.5
457,003 + EX28DRAFT_3154 0.30 -0.7
457,004 - EX28DRAFT_3154 0.30 -3.5
457,061 + EX28DRAFT_3154 0.41 -1.3
457,260 - EX28DRAFT_3154 0.81 -0.0
457,260 - EX28DRAFT_3154 0.81 -0.4
457,385 + +0.3
457,385 + -0.1
457,386 - +0.8
457,386 - +1.5
457,386 - -0.0
457,386 - +0.2
457,386 - -0.3
457,416 - -2.4
457,420 - -2.3
457,427 + -0.5
457,427 + -1.9
457,432 + -0.2
457,505 + +0.9
457,505 + -0.2
457,506 - -0.4
457,506 - -0.2
457,521 + -1.0
457,522 - -0.1
457,629 + EX28DRAFT_3155 0.20 +1.8
457,629 + EX28DRAFT_3155 0.20 -0.3
457,630 - EX28DRAFT_3155 0.20 +0.7
457,630 - EX28DRAFT_3155 0.20 +0.4
457,631 + EX28DRAFT_3155 0.20 +0.5
457,931 + EX28DRAFT_3155 0.50 +0.6
457,955 + EX28DRAFT_3155 0.53 -1.3
457,956 - EX28DRAFT_3155 0.53 +0.6
457,956 - EX28DRAFT_3155 0.53 -2.4
457,958 + EX28DRAFT_3155 0.53 +1.6
457,959 - EX28DRAFT_3155 0.53 +0.1
458,252 + EX28DRAFT_3155 0.82 -1.1
458,253 - EX28DRAFT_3155 0.83 -0.5
458,256 - EX28DRAFT_3155 0.83 +0.3
458,261 + EX28DRAFT_3155 0.83 +0.9
458,261 + EX28DRAFT_3155 0.83 -0.0
458,261 + EX28DRAFT_3155 0.83 -0.0
458,261 + EX28DRAFT_3155 0.83 +0.0
458,261 + EX28DRAFT_3155 0.83 -0.6
458,262 - EX28DRAFT_3155 0.83 -0.4
458,268 + EX28DRAFT_3155 0.84 -1.2
458,268 + EX28DRAFT_3155 0.84 +0.5
458,477 + +0.2
458,478 - -1.0
458,485 + -0.7
458,502 - EX28DRAFT_3156 0.17 +0.4
458,527 + EX28DRAFT_3156 0.39 +1.0
458,527 + EX28DRAFT_3156 0.39 +1.5
458,575 + EX28DRAFT_3156 0.81 +0.1
458,575 + EX28DRAFT_3156 0.81 -0.7
458,576 - EX28DRAFT_3156 0.82 +0.2
458,604 + -0.3
458,604 + +0.1
458,604 + -0.2
458,604 + -0.3
458,605 - -0.8
458,605 - -0.9
458,605 - -0.2
458,610 + -0.4
458,611 - -0.3
458,658 + +0.7
458,658 + +0.2
458,659 - -0.2
458,673 + -3.2
458,673 + +0.0
458,676 + +0.4
458,860 + EX28DRAFT_3157 0.19 -0.6
458,860 + EX28DRAFT_3157 0.19 -3.6
459,026 - EX28DRAFT_3157 0.36 +0.2

Or see this region's nucleotide sequence