Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2871

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2870 and EX28DRAFT_2871 are separated by 295 nucleotidesEX28DRAFT_2871 and EX28DRAFT_2872 are separated by 24 nucleotidesEX28DRAFT_2872 and EX28DRAFT_2873 overlap by 4 nucleotides EX28DRAFT_2870: EX28DRAFT_2870 - D-galactonate transporter, at 177,239 to 178,594 _2870 EX28DRAFT_2871: EX28DRAFT_2871 - Flavodoxins, at 178,890 to 179,339 _2871 EX28DRAFT_2872: EX28DRAFT_2872 - Pseudouridylate synthases, 23S RNA-specific, at 179,364 to 180,140 _2872 EX28DRAFT_2873: EX28DRAFT_2873 - Uncharacterized protein conserved in bacteria, at 180,137 to 180,466 _2873 Position (kb) 178 179 180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 177.916 kb on + strand, within EX28DRAFT_2870at 177.917 kb on - strand, within EX28DRAFT_2870at 177.917 kb on - strand, within EX28DRAFT_2870at 177.917 kb on - strand, within EX28DRAFT_2870at 177.917 kb on - strand, within EX28DRAFT_2870at 177.946 kb on - strand, within EX28DRAFT_2870at 178.277 kb on - strand, within EX28DRAFT_2870at 178.316 kb on - strand, within EX28DRAFT_2870at 178.342 kb on + strand, within EX28DRAFT_2870at 178.392 kb on + strand, within EX28DRAFT_2870at 178.393 kb on - strand, within EX28DRAFT_2870at 178.393 kb on - strand, within EX28DRAFT_2870at 178.419 kb on + strand, within EX28DRAFT_2870at 178.497 kb on + strandat 178.497 kb on + strandat 178.497 kb on + strandat 178.502 kb on - strandat 178.583 kb on + strandat 178.584 kb on - strandat 178.584 kb on - strandat 178.584 kb on - strandat 178.589 kb on - strandat 178.589 kb on - strandat 178.613 kb on + strandat 178.613 kb on + strandat 178.614 kb on - strandat 178.704 kb on + strandat 178.705 kb on - strandat 178.705 kb on - strandat 178.705 kb on - strandat 178.706 kb on + strandat 178.721 kb on + strandat 178.722 kb on - strandat 178.724 kb on - strandat 178.767 kb on + strandat 178.767 kb on + strandat 178.768 kb on - strandat 178.768 kb on - strandat 178.768 kb on - strandat 178.776 kb on + strandat 178.776 kb on + strandat 178.776 kb on + strandat 178.777 kb on - strandat 178.790 kb on + strandat 178.791 kb on - strandat 178.891 kb on + strandat 178.891 kb on + strandat 178.891 kb on + strandat 178.891 kb on + strandat 178.892 kb on - strandat 178.896 kb on - strandat 179.081 kb on - strand, within EX28DRAFT_2871at 179.115 kb on - strand, within EX28DRAFT_2871at 179.188 kb on + strand, within EX28DRAFT_2871at 179.188 kb on + strand, within EX28DRAFT_2871at 179.188 kb on + strand, within EX28DRAFT_2871at 179.189 kb on - strand, within EX28DRAFT_2871at 179.189 kb on - strand, within EX28DRAFT_2871at 179.192 kb on + strand, within EX28DRAFT_2871at 179.193 kb on - strand, within EX28DRAFT_2871at 179.193 kb on - strand, within EX28DRAFT_2871at 179.193 kb on - strand, within EX28DRAFT_2871at 179.268 kb on + strand, within EX28DRAFT_2871at 179.269 kb on - strand, within EX28DRAFT_2871at 179.269 kb on - strand, within EX28DRAFT_2871at 179.269 kb on - strand, within EX28DRAFT_2871at 179.343 kb on - strandat 179.343 kb on - strandat 179.343 kb on - strandat 180.302 kb on + strand, within EX28DRAFT_2873

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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177,916 + EX28DRAFT_2870 0.50 -2.2
177,917 - EX28DRAFT_2870 0.50 -0.6
177,917 - EX28DRAFT_2870 0.50 -0.4
177,917 - EX28DRAFT_2870 0.50 -0.2
177,917 - EX28DRAFT_2870 0.50 -0.2
177,946 - EX28DRAFT_2870 0.52 -2.9
178,277 - EX28DRAFT_2870 0.77 +0.7
178,316 - EX28DRAFT_2870 0.79 -0.3
178,342 + EX28DRAFT_2870 0.81 -1.1
178,392 + EX28DRAFT_2870 0.85 -0.2
178,393 - EX28DRAFT_2870 0.85 -0.3
178,393 - EX28DRAFT_2870 0.85 +0.4
178,419 + EX28DRAFT_2870 0.87 -2.8
178,497 + -3.0
178,497 + +0.3
178,497 + -0.7
178,502 - -1.3
178,583 + -0.0
178,584 - -0.3
178,584 - +0.2
178,584 - -1.4
178,589 - -3.9
178,589 - -4.3
178,613 + +1.3
178,613 + -0.2
178,614 - -0.3
178,704 + -2.2
178,705 - -0.2
178,705 - +1.1
178,705 - -0.9
178,706 + +0.7
178,721 + -0.7
178,722 - -0.5
178,724 - +0.1
178,767 + +0.9
178,767 + -0.6
178,768 - -0.6
178,768 - +0.8
178,768 - +0.6
178,776 + +0.3
178,776 + -2.7
178,776 + -0.7
178,777 - -0.8
178,790 + -0.6
178,791 - -0.1
178,891 + -0.2
178,891 + -0.2
178,891 + +0.5
178,891 + +0.7
178,892 - -2.6
178,896 - +0.9
179,081 - EX28DRAFT_2871 0.42 -0.3
179,115 - EX28DRAFT_2871 0.50 -1.0
179,188 + EX28DRAFT_2871 0.66 +0.2
179,188 + EX28DRAFT_2871 0.66 -0.2
179,188 + EX28DRAFT_2871 0.66 -0.9
179,189 - EX28DRAFT_2871 0.66 -0.8
179,189 - EX28DRAFT_2871 0.66 +1.3
179,192 + EX28DRAFT_2871 0.67 +0.3
179,193 - EX28DRAFT_2871 0.67 +0.0
179,193 - EX28DRAFT_2871 0.67 -0.8
179,193 - EX28DRAFT_2871 0.67 -0.4
179,268 + EX28DRAFT_2871 0.84 -1.1
179,269 - EX28DRAFT_2871 0.84 -0.4
179,269 - EX28DRAFT_2871 0.84 -0.7
179,269 - EX28DRAFT_2871 0.84 +0.1
179,343 - +0.9
179,343 - -0.1
179,343 - -3.0
180,302 + EX28DRAFT_2873 0.50 -0.4

Or see this region's nucleotide sequence