Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2833 and EX28DRAFT_2834 overlap by 4 nucleotides EX28DRAFT_2834 and EX28DRAFT_2835 are separated by 105 nucleotides EX28DRAFT_2835 and EX28DRAFT_2836 overlap by 4 nucleotides EX28DRAFT_2836 and EX28DRAFT_2837 are separated by 52 nucleotides
EX28DRAFT_2833: EX28DRAFT_2833 - Transcriptional regulators, at 136,738 to 137,145
_2833
EX28DRAFT_2834: EX28DRAFT_2834 - Transcriptional regulator, at 137,142 to 138,032
_2834
EX28DRAFT_2835: EX28DRAFT_2835 - Arabinose efflux permease, at 138,138 to 139,340
_2835
EX28DRAFT_2836: EX28DRAFT_2836 - Uncharacterized protein conserved in bacteria, at 139,337 to 139,714
_2836
EX28DRAFT_2837: EX28DRAFT_2837 - RNA polymerase, sigma 38 subunit, RpoS, at 139,767 to 140,759
_2837
Position (kb) 138
139
140 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 137.144 kb on - strand at 137.144 kb on - strand at 137.144 kb on - strand at 137.144 kb on - strand at 137.221 kb on + strand at 137.221 kb on + strand at 137.243 kb on + strand, within EX28DRAFT_2834 at 137.244 kb on - strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.246 kb on - strand, within EX28DRAFT_2834 at 137.463 kb on - strand, within EX28DRAFT_2834 at 137.628 kb on - strand, within EX28DRAFT_2834 at 137.628 kb on - strand, within EX28DRAFT_2834 at 137.725 kb on + strand, within EX28DRAFT_2834 at 137.911 kb on - strand, within EX28DRAFT_2834 at 137.922 kb on - strand, within EX28DRAFT_2834 at 138.024 kb on - strand at 138.107 kb on + strand at 138.108 kb on - strand at 138.112 kb on + strand at 138.144 kb on + strand at 138.168 kb on + strand at 138.200 kb on + strand at 138.200 kb on + strand at 138.200 kb on + strand at 138.201 kb on - strand at 138.201 kb on - strand at 138.207 kb on - strand at 138.286 kb on - strand, within EX28DRAFT_2835 at 138.467 kb on - strand, within EX28DRAFT_2835 at 138.607 kb on + strand, within EX28DRAFT_2835 at 138.608 kb on - strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.819 kb on + strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.924 kb on - strand, within EX28DRAFT_2835 at 139.034 kb on + strand, within EX28DRAFT_2835 at 139.039 kb on + strand, within EX28DRAFT_2835 at 139.142 kb on + strand, within EX28DRAFT_2835 at 139.244 kb on + strand at 139.282 kb on - strand at 139.295 kb on + strand at 139.301 kb on + strand at 139.301 kb on + strand at 139.301 kb on + strand at 139.481 kb on + strand, within EX28DRAFT_2836 at 139.554 kb on + strand, within EX28DRAFT_2836 at 139.555 kb on - strand, within EX28DRAFT_2836 at 139.706 kb on - strand at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.103 kb on - strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.199 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 137,144 - -1.1 137,144 - -2.4 137,144 - +0.8 137,144 - +0.3 137,221 + -0.7 137,221 + +2.6 137,243 + EX28DRAFT_2834 0.11 +1.5 137,244 - EX28DRAFT_2834 0.11 -0.4 137,245 + EX28DRAFT_2834 0.12 +0.1 137,245 + EX28DRAFT_2834 0.12 -2.8 137,245 + EX28DRAFT_2834 0.12 -0.5 137,246 - EX28DRAFT_2834 0.12 +0.7 137,463 - EX28DRAFT_2834 0.36 -0.4 137,628 - EX28DRAFT_2834 0.55 -1.3 137,628 - EX28DRAFT_2834 0.55 -0.2 137,725 + EX28DRAFT_2834 0.65 -1.5 137,911 - EX28DRAFT_2834 0.86 -1.7 137,922 - EX28DRAFT_2834 0.88 -0.7 138,024 - -1.9 138,107 + +0.0 138,108 - -0.1 138,112 + -2.0 138,144 + -0.0 138,168 + +0.0 138,200 + -2.9 138,200 + -2.9 138,200 + +0.7 138,201 - +0.4 138,201 - +0.2 138,207 - +0.1 138,286 - EX28DRAFT_2835 0.12 -0.0 138,467 - EX28DRAFT_2835 0.27 +0.3 138,607 + EX28DRAFT_2835 0.39 -0.3 138,608 - EX28DRAFT_2835 0.39 -0.2 138,768 + EX28DRAFT_2835 0.52 +0.7 138,768 + EX28DRAFT_2835 0.52 +2.2 138,768 + EX28DRAFT_2835 0.52 -3.9 138,769 - EX28DRAFT_2835 0.52 -0.0 138,769 - EX28DRAFT_2835 0.52 -0.7 138,769 - EX28DRAFT_2835 0.52 +0.6 138,769 - EX28DRAFT_2835 0.52 -0.1 138,770 + EX28DRAFT_2835 0.53 +0.2 138,770 + EX28DRAFT_2835 0.53 -0.2 138,819 + EX28DRAFT_2835 0.57 -0.5 138,820 - EX28DRAFT_2835 0.57 +1.2 138,820 - EX28DRAFT_2835 0.57 +0.2 138,924 - EX28DRAFT_2835 0.65 -0.9 139,034 + EX28DRAFT_2835 0.74 -0.2 139,039 + EX28DRAFT_2835 0.75 +1.0 139,142 + EX28DRAFT_2835 0.83 -0.3 139,244 + +3.2 139,282 - -0.1 139,295 + -1.0 139,301 + -0.2 139,301 + -0.1 139,301 + -3.3 139,481 + EX28DRAFT_2836 0.38 +0.1 139,554 + EX28DRAFT_2836 0.57 +0.7 139,555 - EX28DRAFT_2836 0.58 -1.2 139,706 - -0.7 140,102 + EX28DRAFT_2837 0.34 +3.3 140,102 + EX28DRAFT_2837 0.34 -0.2 140,103 - EX28DRAFT_2837 0.34 +2.0 140,126 + EX28DRAFT_2837 0.36 +1.0 140,126 + EX28DRAFT_2837 0.36 +0.8 140,199 - EX28DRAFT_2837 0.44 +1.7 140,286 - EX28DRAFT_2837 0.52 +0.9 140,286 - EX28DRAFT_2837 0.52 +2.0 140,286 - EX28DRAFT_2837 0.52 +1.8
Or see this region's nucleotide sequence