Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2734 and EX28DRAFT_2735 are separated by 187 nucleotides EX28DRAFT_2735 and EX28DRAFT_2736 are separated by 17 nucleotides EX28DRAFT_2736 and EX28DRAFT_2737 are separated by 88 nucleotides EX28DRAFT_2737 and EX28DRAFT_2738 are separated by 57 nucleotides EX28DRAFT_2738 and EX28DRAFT_2739 are separated by 2 nucleotides
EX28DRAFT_2734: EX28DRAFT_2734 - Multidrug resistance efflux pump, at 46,471 to 47,670
_2734
EX28DRAFT_2735: EX28DRAFT_2735 - RNA, at 47,858 to 47,945
_2735
EX28DRAFT_2736: EX28DRAFT_2736 - hypothetical protein, at 47,963 to 48,341
_2736
EX28DRAFT_2737: EX28DRAFT_2737 - addiction module antidote protein, HigA family, at 48,430 to 48,699
_2737
EX28DRAFT_2738: EX28DRAFT_2738 - ADP-ribose pyrophosphatase, at 48,757 to 49,182
_2738
EX28DRAFT_2739: EX28DRAFT_2739 - hypothetical protein, at 49,185 to 49,694
_2739
Position (kb) 47
48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 46.979 kb on + strand, within EX28DRAFT_2734 at 46.980 kb on - strand, within EX28DRAFT_2734 at 46.980 kb on - strand, within EX28DRAFT_2734 at 47.102 kb on + strand, within EX28DRAFT_2734 at 47.102 kb on + strand, within EX28DRAFT_2734 at 47.103 kb on - strand, within EX28DRAFT_2734 at 47.117 kb on - strand, within EX28DRAFT_2734 at 47.117 kb on - strand, within EX28DRAFT_2734 at 47.163 kb on + strand, within EX28DRAFT_2734 at 47.465 kb on + strand, within EX28DRAFT_2734 at 47.494 kb on + strand, within EX28DRAFT_2734 at 47.494 kb on + strand, within EX28DRAFT_2734 at 47.494 kb on + strand, within EX28DRAFT_2734 at 47.495 kb on - strand, within EX28DRAFT_2734 at 47.528 kb on - strand, within EX28DRAFT_2734 at 47.528 kb on - strand, within EX28DRAFT_2734 at 47.538 kb on + strand, within EX28DRAFT_2734 at 47.592 kb on + strand at 47.593 kb on - strand at 47.681 kb on + strand at 47.681 kb on + strand at 47.682 kb on - strand at 47.682 kb on - strand at 47.682 kb on - strand at 47.682 kb on - strand at 47.682 kb on - strand at 47.682 kb on - strand at 47.743 kb on - strand at 47.758 kb on + strand at 47.759 kb on - strand at 48.289 kb on + strand, within EX28DRAFT_2736 at 48.289 kb on + strand, within EX28DRAFT_2736 at 48.569 kb on + strand, within EX28DRAFT_2737 at 48.577 kb on - strand, within EX28DRAFT_2737 at 48.702 kb on + strand at 48.702 kb on + strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.703 kb on - strand at 48.723 kb on - strand at 48.723 kb on - strand at 48.727 kb on + strand at 48.997 kb on + strand, within EX28DRAFT_2738 at 49.025 kb on - strand, within EX28DRAFT_2738 at 49.033 kb on + strand, within EX28DRAFT_2738 at 49.034 kb on - strand, within EX28DRAFT_2738 at 49.122 kb on - strand, within EX28DRAFT_2738 at 49.152 kb on + strand at 49.207 kb on + strand at 49.207 kb on + strand at 49.207 kb on + strand at 49.207 kb on + strand at 49.207 kb on + strand at 49.208 kb on - strand at 49.208 kb on - strand at 49.208 kb on - strand at 49.208 kb on - strand at 49.208 kb on - strand at 49.339 kb on + strand, within EX28DRAFT_2739 at 49.339 kb on + strand, within EX28DRAFT_2739 at 49.340 kb on - strand, within EX28DRAFT_2739 at 49.340 kb on - strand, within EX28DRAFT_2739
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 46,979 + EX28DRAFT_2734 0.42 -1.9 46,980 - EX28DRAFT_2734 0.42 +1.0 46,980 - EX28DRAFT_2734 0.42 +0.8 47,102 + EX28DRAFT_2734 0.53 +0.3 47,102 + EX28DRAFT_2734 0.53 -0.1 47,103 - EX28DRAFT_2734 0.53 +0.2 47,117 - EX28DRAFT_2734 0.54 +1.4 47,117 - EX28DRAFT_2734 0.54 -0.3 47,163 + EX28DRAFT_2734 0.58 +0.1 47,465 + EX28DRAFT_2734 0.83 +0.9 47,494 + EX28DRAFT_2734 0.85 +0.5 47,494 + EX28DRAFT_2734 0.85 +0.8 47,494 + EX28DRAFT_2734 0.85 +0.8 47,495 - EX28DRAFT_2734 0.85 -1.5 47,528 - EX28DRAFT_2734 0.88 +0.1 47,528 - EX28DRAFT_2734 0.88 +0.2 47,538 + EX28DRAFT_2734 0.89 +0.2 47,592 + -0.7 47,593 - +0.1 47,681 + +0.2 47,681 + +0.1 47,682 - -0.5 47,682 - +0.2 47,682 - -0.4 47,682 - -0.4 47,682 - -1.9 47,682 - +0.5 47,743 - -0.2 47,758 + +0.2 47,759 - -1.0 48,289 + EX28DRAFT_2736 0.86 -0.8 48,289 + EX28DRAFT_2736 0.86 -4.4 48,569 + EX28DRAFT_2737 0.51 +0.2 48,577 - EX28DRAFT_2737 0.54 +1.0 48,702 + -1.0 48,702 + -0.9 48,703 - -0.4 48,703 - +0.1 48,703 - -0.3 48,703 - +0.1 48,703 - +0.0 48,703 - -1.0 48,703 - -0.5 48,703 - +0.2 48,703 - +0.9 48,723 - +0.8 48,723 - +0.6 48,727 + -2.0 48,997 + EX28DRAFT_2738 0.56 +1.0 49,025 - EX28DRAFT_2738 0.63 +0.4 49,033 + EX28DRAFT_2738 0.65 +1.8 49,034 - EX28DRAFT_2738 0.65 -0.4 49,122 - EX28DRAFT_2738 0.86 +0.3 49,152 + -4.1 49,207 + -1.3 49,207 + -1.6 49,207 + -3.7 49,207 + -0.3 49,207 + +0.3 49,208 - -2.2 49,208 - +0.3 49,208 - +0.7 49,208 - +0.3 49,208 - +1.0 49,339 + EX28DRAFT_2739 0.30 -0.1 49,339 + EX28DRAFT_2739 0.30 +0.2 49,340 - EX28DRAFT_2739 0.30 -0.7 49,340 - EX28DRAFT_2739 0.30 -2.5
Or see this region's nucleotide sequence