Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2723 and EX28DRAFT_2724 are separated by 89 nucleotides EX28DRAFT_2724 and EX28DRAFT_2725 are separated by 416 nucleotides EX28DRAFT_2725 and EX28DRAFT_2726 are separated by 87 nucleotides EX28DRAFT_2726 and EX28DRAFT_2727 are separated by 68 nucleotides
EX28DRAFT_2723: EX28DRAFT_2723 - SsrA-binding protein, at 26,472 to 26,954
_2723
EX28DRAFT_2724: EX28DRAFT_2724 - RNA, at 27,044 to 27,407
_2724
EX28DRAFT_2725: EX28DRAFT_2725 - hypothetical protein, at 27,824 to 28,180
_2725
EX28DRAFT_2726: EX28DRAFT_2726 - Cupin domain, at 28,268 to 28,612
_2726
EX28DRAFT_2727: EX28DRAFT_2727 - Uncharacterized conserved protein, at 28,681 to 29,238
_2727
Position (kb) 27
28
29 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 27.025 kb on + strand at 27.025 kb on + strand at 27.026 kb on - strand at 27.164 kb on + strand, within EX28DRAFT_2724 at 27.344 kb on + strand, within EX28DRAFT_2724 at 27.344 kb on + strand, within EX28DRAFT_2724 at 27.618 kb on + strand at 27.618 kb on + strand at 27.619 kb on - strand at 27.619 kb on - strand at 27.638 kb on + strand at 27.638 kb on + strand at 27.638 kb on + strand at 27.639 kb on - strand at 27.639 kb on - strand at 27.729 kb on + strand at 27.810 kb on + strand at 27.811 kb on - strand at 27.821 kb on - strand at 27.823 kb on + strand at 27.824 kb on - strand at 27.838 kb on + strand at 27.839 kb on - strand at 27.846 kb on + strand at 27.847 kb on - strand at 28.012 kb on + strand, within EX28DRAFT_2725 at 28.178 kb on + strand at 28.243 kb on - strand at 28.243 kb on - strand at 28.243 kb on - strand at 28.317 kb on + strand, within EX28DRAFT_2726 at 28.317 kb on + strand, within EX28DRAFT_2726 at 28.318 kb on - strand, within EX28DRAFT_2726 at 28.430 kb on - strand, within EX28DRAFT_2726 at 28.617 kb on + strand at 28.665 kb on + strand at 28.697 kb on + strand at 28.698 kb on - strand at 28.701 kb on - strand at 28.701 kb on - strand at 28.748 kb on - strand, within EX28DRAFT_2727 at 28.748 kb on - strand, within EX28DRAFT_2727 at 28.751 kb on + strand, within EX28DRAFT_2727 at 28.752 kb on - strand, within EX28DRAFT_2727 at 28.752 kb on - strand, within EX28DRAFT_2727 at 28.752 kb on - strand, within EX28DRAFT_2727 at 28.910 kb on + strand, within EX28DRAFT_2727 at 29.163 kb on + strand, within EX28DRAFT_2727
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 27,025 + -1.5 27,025 + -3.0 27,026 - -0.8 27,164 + EX28DRAFT_2724 0.33 +0.3 27,344 + EX28DRAFT_2724 0.82 -1.6 27,344 + EX28DRAFT_2724 0.82 -1.8 27,618 + -1.1 27,618 + -0.5 27,619 - -1.9 27,619 - -0.2 27,638 + -4.7 27,638 + +0.9 27,638 + -0.5 27,639 - -1.6 27,639 - +0.2 27,729 + +1.3 27,810 + +0.8 27,811 - -1.2 27,821 - +0.5 27,823 + -0.8 27,824 - +0.5 27,838 + +1.5 27,839 - -1.5 27,846 + +0.7 27,847 - -0.4 28,012 + EX28DRAFT_2725 0.53 -0.7 28,178 + +0.1 28,243 - +0.2 28,243 - +0.1 28,243 - +0.1 28,317 + EX28DRAFT_2726 0.14 +0.5 28,317 + EX28DRAFT_2726 0.14 +0.5 28,318 - EX28DRAFT_2726 0.14 +0.5 28,430 - EX28DRAFT_2726 0.47 +1.1 28,617 + -1.6 28,665 + -0.3 28,697 + -0.8 28,698 - -0.3 28,701 - -0.1 28,701 - -0.2 28,748 - EX28DRAFT_2727 0.12 +0.3 28,748 - EX28DRAFT_2727 0.12 +0.4 28,751 + EX28DRAFT_2727 0.13 -0.3 28,752 - EX28DRAFT_2727 0.13 -0.6 28,752 - EX28DRAFT_2727 0.13 -1.4 28,752 - EX28DRAFT_2727 0.13 +0.4 28,910 + EX28DRAFT_2727 0.41 +2.2 29,163 + EX28DRAFT_2727 0.86 +1.1
Or see this region's nucleotide sequence