Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2656

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2654 and EX28DRAFT_2655 are separated by 106 nucleotidesEX28DRAFT_2655 and EX28DRAFT_2656 are separated by 260 nucleotidesEX28DRAFT_2656 and EX28DRAFT_2657 are separated by 77 nucleotides EX28DRAFT_2654: EX28DRAFT_2654 - Alpha/beta hydrolase of unknown function (DUF1100), at 2,691,388 to 2,692,632 _2654 EX28DRAFT_2655: EX28DRAFT_2655 - Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins, at 2,692,739 to 2,693,197 _2655 EX28DRAFT_2656: EX28DRAFT_2656 - Xaa-His dipeptidase, at 2,693,458 to 2,694,915 _2656 EX28DRAFT_2657: EX28DRAFT_2657 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,694,993 to 2,696,051 _2657 Position (kb) 2693 2694 2695Strain fitness (log2 ratio) -2 -1 0 1at 2692.658 kb on - strandat 2692.666 kb on + strandat 2692.666 kb on + strandat 2692.666 kb on + strandat 2692.686 kb on + strandat 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.101 kb on + strand, within EX28DRAFT_2655at 2693.185 kb on - strandat 2693.220 kb on + strandat 2693.252 kb on - strandat 2693.329 kb on + strandat 2693.329 kb on + strandat 2693.330 kb on - strandat 2693.330 kb on - strandat 2693.330 kb on - strandat 2693.356 kb on + strandat 2693.395 kb on + strandat 2693.396 kb on - strandat 2693.396 kb on - strandat 2693.454 kb on + strandat 2693.455 kb on - strandat 2693.455 kb on - strandat 2693.562 kb on + strandat 2693.562 kb on + strandat 2693.563 kb on - strandat 2693.563 kb on - strandat 2693.565 kb on + strandat 2693.566 kb on - strandat 2693.753 kb on - strand, within EX28DRAFT_2656at 2693.785 kb on - strand, within EX28DRAFT_2656at 2694.303 kb on - strand, within EX28DRAFT_2656at 2694.305 kb on - strand, within EX28DRAFT_2656at 2694.578 kb on - strand, within EX28DRAFT_2656at 2694.714 kb on + strand, within EX28DRAFT_2656at 2694.910 kb on - strandat 2694.913 kb on + strandat 2694.914 kb on - strandat 2694.914 kb on - strandat 2694.916 kb on + strandat 2694.961 kb on - strandat 2695.249 kb on + strand, within EX28DRAFT_2657at 2695.567 kb on + strand, within EX28DRAFT_2657at 2695.567 kb on + strand, within EX28DRAFT_2657at 2695.568 kb on - strand, within EX28DRAFT_2657at 2695.583 kb on + strand, within EX28DRAFT_2657at 2695.584 kb on - strand, within EX28DRAFT_2657at 2695.772 kb on + strand, within EX28DRAFT_2657at 2695.772 kb on + strand, within EX28DRAFT_2657at 2695.772 kb on + strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.773 kb on - strand, within EX28DRAFT_2657at 2695.815 kb on - strand, within EX28DRAFT_2657at 2695.864 kb on - strand, within EX28DRAFT_2657

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,692,658 - -0.8
2,692,666 + +0.8
2,692,666 + +0.0
2,692,666 + +0.6
2,692,686 + +0.4
2,693,011 - EX28DRAFT_2655 0.59 +0.9
2,693,011 - EX28DRAFT_2655 0.59 +0.0
2,693,011 - EX28DRAFT_2655 0.59 +1.0
2,693,011 - EX28DRAFT_2655 0.59 -0.0
2,693,101 + EX28DRAFT_2655 0.79 +1.3
2,693,185 - +0.6
2,693,220 + +0.0
2,693,252 - -0.2
2,693,329 + -0.9
2,693,329 + +0.2
2,693,330 - +0.7
2,693,330 - -0.1
2,693,330 - -0.2
2,693,356 + -0.1
2,693,395 + -2.6
2,693,396 - +1.1
2,693,396 - +0.7
2,693,454 + -0.8
2,693,455 - +0.7
2,693,455 - -0.4
2,693,562 + -0.2
2,693,562 + +1.6
2,693,563 - -0.3
2,693,563 - -0.5
2,693,565 + -0.3
2,693,566 - +0.5
2,693,753 - EX28DRAFT_2656 0.20 -0.2
2,693,785 - EX28DRAFT_2656 0.22 -0.6
2,694,303 - EX28DRAFT_2656 0.58 -0.6
2,694,305 - EX28DRAFT_2656 0.58 -0.2
2,694,578 - EX28DRAFT_2656 0.77 +0.1
2,694,714 + EX28DRAFT_2656 0.86 -0.4
2,694,910 - -0.2
2,694,913 + -1.4
2,694,914 - -2.1
2,694,914 - -0.1
2,694,916 + -0.6
2,694,961 - -0.3
2,695,249 + EX28DRAFT_2657 0.24 -0.4
2,695,567 + EX28DRAFT_2657 0.54 -0.1
2,695,567 + EX28DRAFT_2657 0.54 +0.3
2,695,568 - EX28DRAFT_2657 0.54 -0.6
2,695,583 + EX28DRAFT_2657 0.56 -0.4
2,695,584 - EX28DRAFT_2657 0.56 +1.5
2,695,772 + EX28DRAFT_2657 0.74 +0.4
2,695,772 + EX28DRAFT_2657 0.74 -0.2
2,695,772 + EX28DRAFT_2657 0.74 +0.3
2,695,773 - EX28DRAFT_2657 0.74 -0.8
2,695,773 - EX28DRAFT_2657 0.74 -0.4
2,695,773 - EX28DRAFT_2657 0.74 -0.4
2,695,773 - EX28DRAFT_2657 0.74 +0.3
2,695,815 - EX28DRAFT_2657 0.78 -0.0
2,695,864 - EX28DRAFT_2657 0.82 +0.7

Or see this region's nucleotide sequence