Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2623 and EX28DRAFT_2624 are separated by 397 nucleotides EX28DRAFT_2624 and EX28DRAFT_2625 are separated by 23 nucleotides EX28DRAFT_2625 and EX28DRAFT_2626 are separated by 13 nucleotides
EX28DRAFT_2623: EX28DRAFT_2623 - Enolase, at 2,661,692 to 2,662,963
_2623
EX28DRAFT_2624: EX28DRAFT_2624 - Phosphotransferase enzyme family, at 2,663,361 to 2,664,416
_2624
EX28DRAFT_2625: EX28DRAFT_2625 - Peptidase family U32, at 2,664,440 to 2,665,378
_2625
EX28DRAFT_2626: EX28DRAFT_2626 - hypothetical protein, at 2,665,392 to 2,666,168
_2626
Position (kb)
2663
2664
2665 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2662.443 kb on + strand, within EX28DRAFT_2623 at 2662.472 kb on + strand, within EX28DRAFT_2623 at 2662.473 kb on - strand, within EX28DRAFT_2623 at 2662.555 kb on + strand, within EX28DRAFT_2623 at 2662.673 kb on + strand, within EX28DRAFT_2623 at 2662.673 kb on + strand, within EX28DRAFT_2623 at 2662.673 kb on + strand, within EX28DRAFT_2623 at 2662.781 kb on + strand, within EX28DRAFT_2623 at 2662.852 kb on + strand at 2662.938 kb on - strand at 2662.996 kb on + strand at 2663.001 kb on - strand at 2663.068 kb on - strand at 2663.273 kb on + strand at 2663.330 kb on - strand at 2663.436 kb on + strand at 2663.524 kb on + strand, within EX28DRAFT_2624 at 2663.741 kb on - strand, within EX28DRAFT_2624 at 2663.800 kb on + strand, within EX28DRAFT_2624 at 2663.816 kb on - strand, within EX28DRAFT_2624 at 2663.865 kb on + strand, within EX28DRAFT_2624 at 2663.919 kb on + strand, within EX28DRAFT_2624 at 2663.922 kb on - strand, within EX28DRAFT_2624 at 2664.011 kb on - strand, within EX28DRAFT_2624 at 2664.265 kb on + strand, within EX28DRAFT_2624 at 2664.439 kb on + strand at 2664.476 kb on - strand at 2664.725 kb on + strand, within EX28DRAFT_2625 at 2664.769 kb on + strand, within EX28DRAFT_2625 at 2664.770 kb on - strand, within EX28DRAFT_2625 at 2664.900 kb on - strand, within EX28DRAFT_2625 at 2664.962 kb on - strand, within EX28DRAFT_2625 at 2664.970 kb on + strand, within EX28DRAFT_2625 at 2665.003 kb on + strand, within EX28DRAFT_2625 at 2665.006 kb on + strand, within EX28DRAFT_2625 at 2665.045 kb on + strand, within EX28DRAFT_2625 at 2665.045 kb on + strand, within EX28DRAFT_2625 at 2665.045 kb on + strand, within EX28DRAFT_2625 at 2665.046 kb on - strand, within EX28DRAFT_2625 at 2665.046 kb on - strand, within EX28DRAFT_2625 at 2665.048 kb on + strand, within EX28DRAFT_2625 at 2665.048 kb on + strand, within EX28DRAFT_2625 at 2665.048 kb on + strand, within EX28DRAFT_2625 at 2665.079 kb on + strand, within EX28DRAFT_2625 at 2665.134 kb on - strand, within EX28DRAFT_2625 at 2665.134 kb on - strand, within EX28DRAFT_2625 at 2665.152 kb on - strand, within EX28DRAFT_2625 at 2665.152 kb on - strand, within EX28DRAFT_2625 at 2665.163 kb on + strand, within EX28DRAFT_2625 at 2665.202 kb on + strand, within EX28DRAFT_2625 at 2665.327 kb on - strand at 2665.376 kb on + strand at 2665.377 kb on - strand at 2665.377 kb on - strand at 2665.377 kb on - strand at 2665.399 kb on + strand at 2665.400 kb on - strand at 2665.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,662,443 + EX28DRAFT_2623 0.59 -1.4 2,662,472 + EX28DRAFT_2623 0.61 +1.0 2,662,473 - EX28DRAFT_2623 0.61 -1.8 2,662,555 + EX28DRAFT_2623 0.68 +0.9 2,662,673 + EX28DRAFT_2623 0.77 +0.8 2,662,673 + EX28DRAFT_2623 0.77 +0.7 2,662,673 + EX28DRAFT_2623 0.77 +2.0 2,662,781 + EX28DRAFT_2623 0.86 -0.1 2,662,852 + +0.5 2,662,938 - +0.8 2,662,996 + +1.7 2,663,001 - -1.0 2,663,068 - +0.4 2,663,273 + -2.1 2,663,330 - -1.4 2,663,436 + +0.0 2,663,524 + EX28DRAFT_2624 0.15 +0.0 2,663,741 - EX28DRAFT_2624 0.36 -1.7 2,663,800 + EX28DRAFT_2624 0.42 -2.6 2,663,816 - EX28DRAFT_2624 0.43 -3.1 2,663,865 + EX28DRAFT_2624 0.48 -4.4 2,663,919 + EX28DRAFT_2624 0.53 -0.5 2,663,922 - EX28DRAFT_2624 0.53 -4.2 2,664,011 - EX28DRAFT_2624 0.62 -2.9 2,664,265 + EX28DRAFT_2624 0.86 -0.4 2,664,439 + -0.2 2,664,476 - +0.6 2,664,725 + EX28DRAFT_2625 0.30 -0.6 2,664,769 + EX28DRAFT_2625 0.35 -1.0 2,664,770 - EX28DRAFT_2625 0.35 +0.3 2,664,900 - EX28DRAFT_2625 0.49 -0.7 2,664,962 - EX28DRAFT_2625 0.56 -1.5 2,664,970 + EX28DRAFT_2625 0.56 -0.0 2,665,003 + EX28DRAFT_2625 0.60 -0.0 2,665,006 + EX28DRAFT_2625 0.60 +0.5 2,665,045 + EX28DRAFT_2625 0.64 -1.1 2,665,045 + EX28DRAFT_2625 0.64 +0.3 2,665,045 + EX28DRAFT_2625 0.64 -1.4 2,665,046 - EX28DRAFT_2625 0.65 -2.8 2,665,046 - EX28DRAFT_2625 0.65 -0.3 2,665,048 + EX28DRAFT_2625 0.65 -0.2 2,665,048 + EX28DRAFT_2625 0.65 +0.3 2,665,048 + EX28DRAFT_2625 0.65 -3.1 2,665,079 + EX28DRAFT_2625 0.68 -0.2 2,665,134 - EX28DRAFT_2625 0.74 -3.3 2,665,134 - EX28DRAFT_2625 0.74 +0.7 2,665,152 - EX28DRAFT_2625 0.76 +0.2 2,665,152 - EX28DRAFT_2625 0.76 +0.8 2,665,163 + EX28DRAFT_2625 0.77 +2.0 2,665,202 + EX28DRAFT_2625 0.81 -4.1 2,665,327 - -0.7 2,665,376 + -2.1 2,665,377 - -4.6 2,665,377 - -0.6 2,665,377 - +0.0 2,665,399 + -2.8 2,665,400 - -0.2 2,665,400 - -0.5
Or see this region's nucleotide sequence