Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2624

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2623 and EX28DRAFT_2624 are separated by 397 nucleotidesEX28DRAFT_2624 and EX28DRAFT_2625 are separated by 23 nucleotidesEX28DRAFT_2625 and EX28DRAFT_2626 are separated by 13 nucleotides EX28DRAFT_2623: EX28DRAFT_2623 - Enolase, at 2,661,692 to 2,662,963 _2623 EX28DRAFT_2624: EX28DRAFT_2624 - Phosphotransferase enzyme family, at 2,663,361 to 2,664,416 _2624 EX28DRAFT_2625: EX28DRAFT_2625 - Peptidase family U32, at 2,664,440 to 2,665,378 _2625 EX28DRAFT_2626: EX28DRAFT_2626 - hypothetical protein, at 2,665,392 to 2,666,168 _2626 Position (kb) 2663 2664 2665Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2662.443 kb on + strand, within EX28DRAFT_2623at 2662.472 kb on + strand, within EX28DRAFT_2623at 2662.473 kb on - strand, within EX28DRAFT_2623at 2662.555 kb on + strand, within EX28DRAFT_2623at 2662.673 kb on + strand, within EX28DRAFT_2623at 2662.673 kb on + strand, within EX28DRAFT_2623at 2662.673 kb on + strand, within EX28DRAFT_2623at 2662.781 kb on + strand, within EX28DRAFT_2623at 2662.852 kb on + strandat 2662.938 kb on - strandat 2662.996 kb on + strandat 2663.001 kb on - strandat 2663.068 kb on - strandat 2663.273 kb on + strandat 2663.330 kb on - strandat 2663.436 kb on + strandat 2663.524 kb on + strand, within EX28DRAFT_2624at 2663.741 kb on - strand, within EX28DRAFT_2624at 2663.800 kb on + strand, within EX28DRAFT_2624at 2663.816 kb on - strand, within EX28DRAFT_2624at 2663.865 kb on + strand, within EX28DRAFT_2624at 2663.919 kb on + strand, within EX28DRAFT_2624at 2663.922 kb on - strand, within EX28DRAFT_2624at 2664.011 kb on - strand, within EX28DRAFT_2624at 2664.265 kb on + strand, within EX28DRAFT_2624at 2664.439 kb on + strandat 2664.476 kb on - strandat 2664.725 kb on + strand, within EX28DRAFT_2625at 2664.769 kb on + strand, within EX28DRAFT_2625at 2664.770 kb on - strand, within EX28DRAFT_2625at 2664.900 kb on - strand, within EX28DRAFT_2625at 2664.962 kb on - strand, within EX28DRAFT_2625at 2664.970 kb on + strand, within EX28DRAFT_2625at 2665.003 kb on + strand, within EX28DRAFT_2625at 2665.006 kb on + strand, within EX28DRAFT_2625at 2665.045 kb on + strand, within EX28DRAFT_2625at 2665.045 kb on + strand, within EX28DRAFT_2625at 2665.045 kb on + strand, within EX28DRAFT_2625at 2665.046 kb on - strand, within EX28DRAFT_2625at 2665.046 kb on - strand, within EX28DRAFT_2625at 2665.048 kb on + strand, within EX28DRAFT_2625at 2665.048 kb on + strand, within EX28DRAFT_2625at 2665.048 kb on + strand, within EX28DRAFT_2625at 2665.079 kb on + strand, within EX28DRAFT_2625at 2665.134 kb on - strand, within EX28DRAFT_2625at 2665.134 kb on - strand, within EX28DRAFT_2625at 2665.152 kb on - strand, within EX28DRAFT_2625at 2665.152 kb on - strand, within EX28DRAFT_2625at 2665.163 kb on + strand, within EX28DRAFT_2625at 2665.202 kb on + strand, within EX28DRAFT_2625at 2665.327 kb on - strandat 2665.376 kb on + strandat 2665.377 kb on - strandat 2665.377 kb on - strandat 2665.377 kb on - strandat 2665.399 kb on + strandat 2665.400 kb on - strandat 2665.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,662,443 + EX28DRAFT_2623 0.59 -1.4
2,662,472 + EX28DRAFT_2623 0.61 +1.0
2,662,473 - EX28DRAFT_2623 0.61 -1.8
2,662,555 + EX28DRAFT_2623 0.68 +0.9
2,662,673 + EX28DRAFT_2623 0.77 +0.8
2,662,673 + EX28DRAFT_2623 0.77 +0.7
2,662,673 + EX28DRAFT_2623 0.77 +2.0
2,662,781 + EX28DRAFT_2623 0.86 -0.1
2,662,852 + +0.5
2,662,938 - +0.8
2,662,996 + +1.7
2,663,001 - -1.0
2,663,068 - +0.4
2,663,273 + -2.1
2,663,330 - -1.4
2,663,436 + +0.0
2,663,524 + EX28DRAFT_2624 0.15 +0.0
2,663,741 - EX28DRAFT_2624 0.36 -1.7
2,663,800 + EX28DRAFT_2624 0.42 -2.6
2,663,816 - EX28DRAFT_2624 0.43 -3.1
2,663,865 + EX28DRAFT_2624 0.48 -4.4
2,663,919 + EX28DRAFT_2624 0.53 -0.5
2,663,922 - EX28DRAFT_2624 0.53 -4.2
2,664,011 - EX28DRAFT_2624 0.62 -2.9
2,664,265 + EX28DRAFT_2624 0.86 -0.4
2,664,439 + -0.2
2,664,476 - +0.6
2,664,725 + EX28DRAFT_2625 0.30 -0.6
2,664,769 + EX28DRAFT_2625 0.35 -1.0
2,664,770 - EX28DRAFT_2625 0.35 +0.3
2,664,900 - EX28DRAFT_2625 0.49 -0.7
2,664,962 - EX28DRAFT_2625 0.56 -1.5
2,664,970 + EX28DRAFT_2625 0.56 -0.0
2,665,003 + EX28DRAFT_2625 0.60 -0.0
2,665,006 + EX28DRAFT_2625 0.60 +0.5
2,665,045 + EX28DRAFT_2625 0.64 -1.1
2,665,045 + EX28DRAFT_2625 0.64 +0.3
2,665,045 + EX28DRAFT_2625 0.64 -1.4
2,665,046 - EX28DRAFT_2625 0.65 -2.8
2,665,046 - EX28DRAFT_2625 0.65 -0.3
2,665,048 + EX28DRAFT_2625 0.65 -0.2
2,665,048 + EX28DRAFT_2625 0.65 +0.3
2,665,048 + EX28DRAFT_2625 0.65 -3.1
2,665,079 + EX28DRAFT_2625 0.68 -0.2
2,665,134 - EX28DRAFT_2625 0.74 -3.3
2,665,134 - EX28DRAFT_2625 0.74 +0.7
2,665,152 - EX28DRAFT_2625 0.76 +0.2
2,665,152 - EX28DRAFT_2625 0.76 +0.8
2,665,163 + EX28DRAFT_2625 0.77 +2.0
2,665,202 + EX28DRAFT_2625 0.81 -4.1
2,665,327 - -0.7
2,665,376 + -2.1
2,665,377 - -4.6
2,665,377 - -0.6
2,665,377 - +0.0
2,665,399 + -2.8
2,665,400 - -0.2
2,665,400 - -0.5

Or see this region's nucleotide sequence