Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2606 and EX28DRAFT_2607 are separated by 241 nucleotides EX28DRAFT_2607 and EX28DRAFT_2608 overlap by 14 nucleotides
EX28DRAFT_2606: EX28DRAFT_2606 - taurine ABC transporter, periplasmic binding protein, at 2,642,229 to 2,643,191
_2606
EX28DRAFT_2607: EX28DRAFT_2607 - Homocysteine/selenocysteine methylase (S-methylmethionine-dependent), at 2,643,433 to 2,644,365
_2607
EX28DRAFT_2608: EX28DRAFT_2608 - Amino acid transporters, at 2,644,352 to 2,645,752
_2608
Position (kb)
2643
2644
2645 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2642.489 kb on - strand, within EX28DRAFT_2606 at 2642.568 kb on + strand, within EX28DRAFT_2606 at 2642.574 kb on + strand, within EX28DRAFT_2606 at 2642.672 kb on - strand, within EX28DRAFT_2606 at 2642.672 kb on - strand, within EX28DRAFT_2606 at 2643.107 kb on - strand at 2643.191 kb on + strand at 2643.214 kb on - strand at 2643.225 kb on - strand at 2643.225 kb on - strand at 2643.389 kb on + strand at 2643.396 kb on - strand at 2643.494 kb on - strand at 2643.588 kb on - strand, within EX28DRAFT_2607 at 2643.951 kb on - strand, within EX28DRAFT_2607 at 2644.049 kb on + strand, within EX28DRAFT_2607 at 2644.049 kb on + strand, within EX28DRAFT_2607 at 2644.050 kb on - strand, within EX28DRAFT_2607 at 2644.194 kb on - strand, within EX28DRAFT_2607 at 2644.264 kb on + strand, within EX28DRAFT_2607 at 2644.387 kb on + strand at 2644.387 kb on + strand at 2644.401 kb on + strand at 2644.401 kb on + strand at 2644.402 kb on - strand at 2644.404 kb on + strand at 2644.504 kb on + strand, within EX28DRAFT_2608 at 2644.723 kb on + strand, within EX28DRAFT_2608 at 2644.724 kb on - strand, within EX28DRAFT_2608 at 2644.724 kb on - strand, within EX28DRAFT_2608 at 2644.831 kb on - strand, within EX28DRAFT_2608 at 2645.006 kb on - strand, within EX28DRAFT_2608 at 2645.006 kb on - strand, within EX28DRAFT_2608 at 2645.219 kb on - strand, within EX28DRAFT_2608 at 2645.252 kb on - strand, within EX28DRAFT_2608 at 2645.324 kb on - strand, within EX28DRAFT_2608
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,642,489 - EX28DRAFT_2606 0.27 +1.3 2,642,568 + EX28DRAFT_2606 0.35 -1.4 2,642,574 + EX28DRAFT_2606 0.36 +1.1 2,642,672 - EX28DRAFT_2606 0.46 -0.5 2,642,672 - EX28DRAFT_2606 0.46 -1.4 2,643,107 - -0.4 2,643,191 + +0.2 2,643,214 - +0.1 2,643,225 - +0.3 2,643,225 - +0.6 2,643,389 + +0.7 2,643,396 - -1.2 2,643,494 - -5.0 2,643,588 - EX28DRAFT_2607 0.17 -1.0 2,643,951 - EX28DRAFT_2607 0.56 +1.2 2,644,049 + EX28DRAFT_2607 0.66 +0.6 2,644,049 + EX28DRAFT_2607 0.66 -1.0 2,644,050 - EX28DRAFT_2607 0.66 -0.8 2,644,194 - EX28DRAFT_2607 0.82 -0.1 2,644,264 + EX28DRAFT_2607 0.89 -0.1 2,644,387 + -0.4 2,644,387 + -0.4 2,644,401 + +0.7 2,644,401 + +0.5 2,644,402 - +0.2 2,644,404 + +0.8 2,644,504 + EX28DRAFT_2608 0.11 +1.0 2,644,723 + EX28DRAFT_2608 0.26 -4.7 2,644,724 - EX28DRAFT_2608 0.27 -0.2 2,644,724 - EX28DRAFT_2608 0.27 -0.8 2,644,831 - EX28DRAFT_2608 0.34 +0.7 2,645,006 - EX28DRAFT_2608 0.47 +0.3 2,645,006 - EX28DRAFT_2608 0.47 -2.0 2,645,219 - EX28DRAFT_2608 0.62 -0.8 2,645,252 - EX28DRAFT_2608 0.64 -1.1 2,645,324 - EX28DRAFT_2608 0.69 -1.8
Or see this region's nucleotide sequence