Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2473

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2471 and EX28DRAFT_2472 overlap by 4 nucleotidesEX28DRAFT_2472 and EX28DRAFT_2473 overlap by 4 nucleotidesEX28DRAFT_2473 and EX28DRAFT_2474 are separated by 108 nucleotides EX28DRAFT_2471: EX28DRAFT_2471 - Membrane protease subunits, stomatin/prohibitin homologs, at 2,500,249 to 2,501,163 _2471 EX28DRAFT_2472: EX28DRAFT_2472 - Membrane protein implicated in regulation of membrane protease activity, at 2,501,160 to 2,501,612 _2472 EX28DRAFT_2473: EX28DRAFT_2473 - Cu(I)-responsive transcriptional regulator, at 2,501,609 to 2,502,019 _2473 EX28DRAFT_2474: EX28DRAFT_2474 - copper-(or silver)-translocating P-type ATPase, at 2,502,128 to 2,504,626 _2474 Position (kb) 2501 2502 2503Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2500.672 kb on - strand, within EX28DRAFT_2471at 2500.672 kb on - strand, within EX28DRAFT_2471at 2500.908 kb on - strand, within EX28DRAFT_2471at 2501.005 kb on + strand, within EX28DRAFT_2471at 2501.006 kb on - strand, within EX28DRAFT_2471at 2501.006 kb on - strand, within EX28DRAFT_2471at 2501.025 kb on + strand, within EX28DRAFT_2471at 2501.462 kb on + strand, within EX28DRAFT_2472at 2501.890 kb on + strand, within EX28DRAFT_2473at 2501.961 kb on + strand, within EX28DRAFT_2473at 2502.014 kb on - strandat 2502.063 kb on + strandat 2502.064 kb on - strandat 2502.097 kb on - strandat 2502.097 kb on - strandat 2502.113 kb on + strandat 2502.114 kb on - strandat 2502.139 kb on + strandat 2502.321 kb on + strandat 2502.837 kb on - strand, within EX28DRAFT_2474at 2502.920 kb on + strand, within EX28DRAFT_2474at 2502.921 kb on - strand, within EX28DRAFT_2474at 2502.921 kb on - strand, within EX28DRAFT_2474at 2502.925 kb on + strand, within EX28DRAFT_2474at 2502.977 kb on + strand, within EX28DRAFT_2474at 2502.980 kb on + strand, within EX28DRAFT_2474at 2502.981 kb on - strand, within EX28DRAFT_2474at 2502.981 kb on - strand, within EX28DRAFT_2474

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,500,672 - EX28DRAFT_2471 0.46 -1.0
2,500,672 - EX28DRAFT_2471 0.46 +0.5
2,500,908 - EX28DRAFT_2471 0.72 -0.3
2,501,005 + EX28DRAFT_2471 0.83 +0.2
2,501,006 - EX28DRAFT_2471 0.83 -0.7
2,501,006 - EX28DRAFT_2471 0.83 -1.5
2,501,025 + EX28DRAFT_2471 0.85 -0.8
2,501,462 + EX28DRAFT_2472 0.67 +0.3
2,501,890 + EX28DRAFT_2473 0.68 -2.7
2,501,961 + EX28DRAFT_2473 0.86 +0.0
2,502,014 - +1.6
2,502,063 + -0.2
2,502,064 - +1.2
2,502,097 - -0.9
2,502,097 - -4.3
2,502,113 + -0.2
2,502,114 - -2.4
2,502,139 + -2.8
2,502,321 + -1.9
2,502,837 - EX28DRAFT_2474 0.28 -3.2
2,502,920 + EX28DRAFT_2474 0.32 -1.5
2,502,921 - EX28DRAFT_2474 0.32 -1.8
2,502,921 - EX28DRAFT_2474 0.32 -3.8
2,502,925 + EX28DRAFT_2474 0.32 -3.6
2,502,977 + EX28DRAFT_2474 0.34 -4.4
2,502,980 + EX28DRAFT_2474 0.34 -3.8
2,502,981 - EX28DRAFT_2474 0.34 -1.4
2,502,981 - EX28DRAFT_2474 0.34 -4.1

Or see this region's nucleotide sequence