Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2466 and EX28DRAFT_2467 are separated by 58 nucleotides EX28DRAFT_2467 and EX28DRAFT_2468 are separated by 52 nucleotides EX28DRAFT_2468 and EX28DRAFT_2469 overlap by 8 nucleotides EX28DRAFT_2469 and EX28DRAFT_2470 are separated by 143 nucleotides
EX28DRAFT_2466: EX28DRAFT_2466 - Short-chain dehydrogenases of various substrate specificities, at 2,496,027 to 2,496,797
_2466
EX28DRAFT_2467: EX28DRAFT_2467 - Thioredoxin domain-containing protein, at 2,496,856 to 2,497,710
_2467
EX28DRAFT_2468: EX28DRAFT_2468 - TIGR00245 family protein, at 2,497,763 to 2,498,545
_2468
EX28DRAFT_2469: EX28DRAFT_2469 - ABC-type uncharacterized transport system, ATPase component, at 2,498,538 to 2,499,209
_2469
EX28DRAFT_2470: EX28DRAFT_2470 - hypothetical protein, at 2,499,353 to 2,500,204
_2470
Position (kb)
2497
2498
2499 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2496.825 kb on + strand at 2496.825 kb on + strand at 2496.826 kb on - strand at 2496.826 kb on - strand at 2496.826 kb on - strand at 2496.826 kb on - strand at 2496.880 kb on - strand at 2496.940 kb on + strand at 2497.010 kb on - strand, within EX28DRAFT_2467 at 2497.092 kb on + strand, within EX28DRAFT_2467 at 2497.099 kb on + strand, within EX28DRAFT_2467 at 2497.099 kb on + strand, within EX28DRAFT_2467 at 2497.240 kb on - strand, within EX28DRAFT_2467 at 2497.243 kb on + strand, within EX28DRAFT_2467 at 2497.706 kb on - strand at 2497.812 kb on + strand at 2497.877 kb on - strand, within EX28DRAFT_2468 at 2497.877 kb on - strand, within EX28DRAFT_2468 at 2497.897 kb on - strand, within EX28DRAFT_2468 at 2497.900 kb on + strand, within EX28DRAFT_2468 at 2497.988 kb on + strand, within EX28DRAFT_2468 at 2498.067 kb on - strand, within EX28DRAFT_2468 at 2498.121 kb on + strand, within EX28DRAFT_2468 at 2498.122 kb on - strand, within EX28DRAFT_2468 at 2498.278 kb on + strand, within EX28DRAFT_2468 at 2498.286 kb on + strand, within EX28DRAFT_2468 at 2498.329 kb on + strand, within EX28DRAFT_2468 at 2498.329 kb on + strand, within EX28DRAFT_2468 at 2498.377 kb on + strand, within EX28DRAFT_2468 at 2498.379 kb on + strand, within EX28DRAFT_2468 at 2498.391 kb on + strand, within EX28DRAFT_2468 at 2498.392 kb on - strand, within EX28DRAFT_2468 at 2498.435 kb on + strand, within EX28DRAFT_2468 at 2498.436 kb on - strand, within EX28DRAFT_2468 at 2498.441 kb on - strand, within EX28DRAFT_2468 at 2498.527 kb on + strand at 2498.527 kb on + strand at 2498.534 kb on - strand at 2498.586 kb on - strand at 2498.586 kb on - strand at 2498.608 kb on - strand, within EX28DRAFT_2469 at 2498.608 kb on - strand, within EX28DRAFT_2469 at 2498.645 kb on + strand, within EX28DRAFT_2469 at 2498.882 kb on + strand, within EX28DRAFT_2469 at 2498.957 kb on - strand, within EX28DRAFT_2469 at 2499.074 kb on + strand, within EX28DRAFT_2469 at 2499.100 kb on - strand, within EX28DRAFT_2469 at 2499.187 kb on - strand at 2499.187 kb on - strand at 2499.187 kb on - strand at 2499.189 kb on + strand at 2499.190 kb on - strand at 2499.211 kb on - strand at 2499.235 kb on - strand at 2499.237 kb on + strand at 2499.252 kb on + strand at 2499.337 kb on - strand at 2499.345 kb on + strand at 2499.346 kb on - strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.362 kb on - strand at 2499.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,496,825 + -3.1 2,496,825 + -0.2 2,496,826 - -0.1 2,496,826 - +0.1 2,496,826 - +0.4 2,496,826 - -0.4 2,496,880 - +0.1 2,496,940 + -2.3 2,497,010 - EX28DRAFT_2467 0.18 -0.8 2,497,092 + EX28DRAFT_2467 0.28 -0.5 2,497,099 + EX28DRAFT_2467 0.28 -0.8 2,497,099 + EX28DRAFT_2467 0.28 +0.0 2,497,240 - EX28DRAFT_2467 0.45 -0.2 2,497,243 + EX28DRAFT_2467 0.45 +2.3 2,497,706 - +0.3 2,497,812 + +0.3 2,497,877 - EX28DRAFT_2468 0.15 -0.3 2,497,877 - EX28DRAFT_2468 0.15 +0.4 2,497,897 - EX28DRAFT_2468 0.17 +0.2 2,497,900 + EX28DRAFT_2468 0.17 -0.0 2,497,988 + EX28DRAFT_2468 0.29 +0.3 2,498,067 - EX28DRAFT_2468 0.39 -2.6 2,498,121 + EX28DRAFT_2468 0.46 +0.2 2,498,122 - EX28DRAFT_2468 0.46 -0.0 2,498,278 + EX28DRAFT_2468 0.66 -0.5 2,498,286 + EX28DRAFT_2468 0.67 -0.4 2,498,329 + EX28DRAFT_2468 0.72 -0.2 2,498,329 + EX28DRAFT_2468 0.72 +0.1 2,498,377 + EX28DRAFT_2468 0.78 -0.3 2,498,379 + EX28DRAFT_2468 0.79 -1.4 2,498,391 + EX28DRAFT_2468 0.80 -1.1 2,498,392 - EX28DRAFT_2468 0.80 +0.4 2,498,435 + EX28DRAFT_2468 0.86 -0.1 2,498,436 - EX28DRAFT_2468 0.86 +0.2 2,498,441 - EX28DRAFT_2468 0.87 +1.0 2,498,527 + +0.1 2,498,527 + +0.5 2,498,534 - -0.6 2,498,586 - +1.2 2,498,586 - +0.6 2,498,608 - EX28DRAFT_2469 0.10 +0.5 2,498,608 - EX28DRAFT_2469 0.10 +0.0 2,498,645 + EX28DRAFT_2469 0.16 -1.9 2,498,882 + EX28DRAFT_2469 0.51 -0.2 2,498,957 - EX28DRAFT_2469 0.62 +0.1 2,499,074 + EX28DRAFT_2469 0.80 -1.0 2,499,100 - EX28DRAFT_2469 0.84 +0.4 2,499,187 - -1.2 2,499,187 - +0.4 2,499,187 - -1.1 2,499,189 + -1.1 2,499,190 - -2.2 2,499,211 - +0.8 2,499,235 - +0.1 2,499,237 + +0.2 2,499,252 + +0.1 2,499,337 - +0.1 2,499,345 + -0.4 2,499,346 - -0.2 2,499,361 + -1.1 2,499,361 + -0.2 2,499,361 + +1.1 2,499,362 - +0.4 2,499,415 - -0.2
Or see this region's nucleotide sequence